View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2323_low_9 (Length: 328)

Name: NF2323_low_9
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2323_low_9
NF2323_low_9
[»] chr3 (7 HSPs)
chr3 (18-311)||(47414954-47415247)
chr3 (18-210)||(47398310-47398502)
chr3 (71-209)||(46543041-46543179)
chr3 (22-105)||(5155299-5155382)
chr3 (18-65)||(46531348-46531395)
chr3 (20-90)||(46507118-46507188)
chr3 (13-109)||(4582489-4582585)
[»] chr8 (3 HSPs)
chr8 (58-209)||(21465975-21466126)
chr8 (18-108)||(9677632-9677722)
chr8 (21-108)||(9693376-9693463)
[»] chr4 (2 HSPs)
chr4 (19-108)||(15555098-15555187)
chr4 (18-111)||(35160544-35160637)
[»] chr7 (3 HSPs)
chr7 (125-209)||(16729332-16729416)
chr7 (125-209)||(17706404-17706488)
chr7 (125-209)||(17716392-17716476)
[»] chr2 (1 HSPs)
chr2 (49-93)||(20154467-20154511)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 47414954 - 47415247
Alignment:
Q  18 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  47414954 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatgatgagcacggagtg 47415053  T
Q  118 gattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415054 gattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggttc 47415153  T
Q  218 atatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415154 atatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag 47415247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 47398310 - 47398502
Alignment:
Q  18 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtg 117  Q
    ||||||||||||| ||| |||| || || || |||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| ||||||| |||    
T  47398310 aggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttagcacggtgtg 47398409  T
Q  118 gattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtc 210  Q
     |    ||| ||||||||||||||||||||||||||||  | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  47398410 tagcgtcaaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttggttaggtc 47398502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 46543179 - 46543041
Alignment:
Q  71 tgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggaga 170  Q
    |||||||||||||||| ||| |||||||| |||||||||||   ||||| | |||| || ||||||||||| ||||||||||||| ||||| ||||||||    
T  46543179 tgtgtgggaccctcagcgccggccgcaattatgctgagcacaacgtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggaga 46543080  T
Q  171 gcaaatggttggccatggtcatggaaaccttgattaggt 209  Q
     |||||| ||||| |||||||  |||| |||| ||||||    
T  46543079 acaaatgtttggcgatggtcacagaaaacttgtttaggt 46543041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 5155382 - 5155299
Alignment:
Q  22 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgct 105  Q
    ||||||||| ||| ||||||| ||   ||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgct 5155299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 46531395 - 46531348
Alignment:
Q  18 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 65  Q
    |||||||||||||||||||||||||||| || ||||||  ||||||||    
T  46531395 aggagttgagatgatcaatggattttgaaccaaggaaggagagaagct 46531348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 46507118 - 46507188
Alignment:
Q  20 gagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagcc 90  Q
    |||||||||||||  || ||||| |||| ||||||||| |||| || ||| || |||||||||||||||||    
T  46507118 gagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagcc 46507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 4582489 - 4582585
Alignment:
Q  13 agcataggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagc 109  Q
    |||| ||||||||||||||||| | ||||| |||   |||||||||||||||| ||    |||||| || ||||||||||| || || |||||||||    
T  4582489 agcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagc 4582585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 21465975 - 21466126
Alignment:
Q  58 gagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagt 157  Q
    |||||| | ||| ||||| ||||| ||||||||||| || |||||||| | |||   ||||| | | ||||||||||||||||||||  |||||||   |    
T  21465975 gagaagttgttgttgtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacacaacattggtttctttgtat 21466074  T
Q  158 tcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 209  Q
    ||||||||||||| |||||| ||||| |||||||  ||||||||| ||||||    
T  21466075 tcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt 21466126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 9677632 - 9677722
Alignment:
Q  18 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 108  Q
    |||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || ||||||||||||||||| || ||||| |||||    
T  9677632 aggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgag 9677722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 9693376 - 9693463
Alignment:
Q  21 agttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 108  Q
    ||||||||||||| ||||||||  | | ||||||||| ||||||| ||| || || ||||| ||||||||| | || |||||||||||    
T  9693376 agttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgag 9693463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 15555187 - 15555098
Alignment:
Q  19 ggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 108  Q
    ||||||||| ||||  ||||||||  ||| ||||||||||||||| | ||| ||||||| ||||||||||||||| || |||||||||||    
T  15555187 ggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 35160637 - 35160544
Alignment:
Q  18 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcac 111  Q
    ||||||||||||||||| |||||||  | | ||||||||| ||||||| ||| ||||| | ||||||||||||||| |  || |||||||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcac 35160544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 16729416 - 16729332
Alignment:
Q  125 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 209  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  16729416 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 16729332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 17706488 - 17706404
Alignment:
Q  125 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 209  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17706488 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17706404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 17716476 - 17716392
Alignment:
Q  125 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 209  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17716476 aatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17716392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 20154511 - 20154467
Alignment:
Q  49 gaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc 93  Q
    ||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagc 20154467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University