View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_13 (Length: 555)
Name: NF2324_high_13
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 309 - 544
Target Start/End: Complemental strand, 49819781 - 49819547
Alignment:
| Q |
309 |
acactacttgatcaatggaaatggtgtgcttcgaatcatctttatggtatcaaccnnnnnnnnctctaaagcctacaccaaatccaccatggttgatcaa |
408 |
Q |
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| T |
49819781 |
acactacttgatcaatggaaatggtgtgcttcgaatcatctttatggtatcaaccttttttttctctaaagcctacaccaa-tccaccatggttgatcaa |
49819683 |
T |
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| Q |
409 |
accacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaactacctatcaatcttaactctatcaactatt |
508 |
Q |
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| T |
49819682 |
accacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaactacctatcaatcttaactctatcaactatt |
49819583 |
T |
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| Q |
509 |
ttgtttggtacgtcaaaacagatccactatcttctt |
544 |
Q |
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| T |
49819582 |
ttgtttggtacgtcaaaacagatccactatcttctt |
49819547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 49820120 - 49819993
Alignment:
| Q |
1 |
cttcatatgcatactagtcatgtcatctaggagtccaccaccccctggaccactacaagttaactaaactatgatggtgttttggtgcaacaatcaggca |
100 |
Q |
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| T |
49820120 |
cttcatatgcatactagtcatgtcatctaggagtccaccaccccctggaccactacaagttaactaaactatgatggtgttgtggtgcaacaatcaggca |
49820021 |
T |
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| Q |
101 |
tatagcatcttgtggaggcgtgcttcgt |
128 |
Q |
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| T |
49820020 |
tatagcatcttgtggaggcgtgcttcgt |
49819993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 49819908 - 49819843
Alignment:
| Q |
179 |
tgtctgtctgatcatattcagttgcataccattcacattcaatatttcatttgtaaaatactcttt |
244 |
Q |
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| T |
49819908 |
tgtctgtctgatcatactcagttgcagaccattcacattcaatatttcatttgtaaaatactcttt |
49819843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 49819974 - 49819934
Alignment:
| Q |
136 |
ttaatcttcctcccgtctaaaggagcaatttactactccata |
177 |
Q |
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| T |
49819974 |
ttaatcttcctcccgtctaaaggagcaa-ttactactccata |
49819934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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