View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_14 (Length: 543)
Name: NF2324_high_14
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Original strand, 39012811 - 39013330
Alignment:
| Q |
13 |
aaaatgtagagacattatgagtactattgtgcttacatgaaataaatatattgaacaaaattattagtagaaagnnnnnnnn---ttaagtacctgtata |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39012811 |
aaaatgtagagacattatgagtactgttgtgcttacatgaaataaatatattgaacaaaattattagtagaaaaataaaataaaattaagtacctgtata |
39012910 |
T |
|
| Q |
110 |
aaactgagtttactttattttcattgcaaatgcagcacatgcctttctttgatgtcttgttactggatttcttgtctttaactgcaatcatgtttcatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39012911 |
aaactgagtttactttattttcattgcaaatgcagcacatgcctttctttgatgtcttgttactggatttcttgtctttaactgcaatcatgtttcatat |
39013010 |
T |
|
| Q |
210 |
acaaaatgagaggtgcataatgtttttgttgaaaagagcaaaggaaaaaagcgagacgacatttatcggatacaccaaacactactgttaagcagaaata |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39013011 |
acaaaatgagaggtgcataatgtttttgttgaaaagagcaaaggaaaaaagcgagacgaaatttatcggatacaccaaacactactgttaagcagaaata |
39013110 |
T |
|
| Q |
310 |
atcacatacatttgtgaacctcttggttttgggattgttgtaattgcatctgcatttgtgtgtctgcacagttttttattgttttccttagctcagacat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39013111 |
atcacatacatttgtgaacctcttggttttgggattgttgtaattgcatctgcatttgtgtgtctgcacagttttttattgttttccttagctcagaaat |
39013210 |
T |
|
| Q |
410 |
ctcttgaaaaagttgttccatttgccctcgcaaaccgtatataatttccatttcctataagccattgaagtatagtgtcattctatatagagagatataa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39013211 |
ctcttgaaaaagttgttccatttgccctcgcaaaccgtatataatttccatttcctataagccattgaagtatagtgtcattctatatagagagatataa |
39013310 |
T |
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| Q |
510 |
acatgtacatagttaaatct |
529 |
Q |
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|||||||||||||||||||| |
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| T |
39013311 |
acatgtacatagttaaatct |
39013330 |
T |
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