View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_high_23 (Length: 461)

Name: NF2324_high_23
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_high_23
NF2324_high_23
[»] chr2 (14 HSPs)
chr2 (1-307)||(35757484-35757797)
chr2 (346-442)||(35757348-35757444)
chr2 (353-423)||(21497660-21497730)
chr2 (354-402)||(12124559-12124607)
chr2 (353-424)||(40967369-40967440)
chr2 (356-402)||(24593390-24593436)
chr2 (356-425)||(9547410-9547479)
chr2 (361-402)||(20120727-20120768)
chr2 (356-413)||(37320518-37320575)
chr2 (353-405)||(4056801-4056853)
chr2 (354-402)||(12124698-12124746)
chr2 (357-413)||(35727440-35727496)
chr2 (356-388)||(36264480-36264512)
chr2 (356-388)||(39090900-39090932)
[»] chr8 (10 HSPs)
chr8 (346-402)||(27750895-27750951)
chr8 (353-417)||(7679901-7679965)
chr8 (362-422)||(26799178-26799238)
chr8 (356-402)||(32192908-32192954)
chr8 (353-402)||(8717473-8717522)
chr8 (361-410)||(33996075-33996124)
chr8 (358-402)||(4830022-4830066)
chr8 (358-402)||(19778079-19778123)
chr8 (354-402)||(27129096-27129144)
chr8 (353-417)||(35102665-35102729)
[»] chr1 (17 HSPs)
chr1 (358-402)||(12500937-12500981)
chr1 (358-402)||(32874392-32874436)
chr1 (358-415)||(1408436-1408493)
chr1 (357-413)||(42841138-42841194)
chr1 (356-402)||(19262908-19262954)
chr1 (356-418)||(27533241-27533303)
chr1 (348-401)||(9639810-9639863)
chr1 (356-417)||(18056717-18056778)
chr1 (361-402)||(48898498-48898539)
chr1 (356-388)||(1090856-1090888)
chr1 (358-402)||(5031157-5031201)
chr1 (355-411)||(10132444-10132500)
chr1 (358-410)||(28455356-28455408)
chr1 (358-402)||(38448869-38448913)
chr1 (353-405)||(40613034-40613086)
chr1 (356-388)||(43896822-43896854)
chr1 (357-401)||(45481508-45481552)
[»] chr3 (13 HSPs)
chr3 (356-423)||(52119369-52119436)
chr3 (361-418)||(10926467-10926524)
chr3 (358-397)||(47039446-47039485)
chr3 (348-402)||(14741808-14741862)
chr3 (356-402)||(53207984-53208030)
chr3 (356-402)||(54230100-54230146)
chr3 (353-402)||(759592-759641)
chr3 (356-413)||(21914072-21914129)
chr3 (356-405)||(39779035-39779084)
chr3 (361-422)||(47377355-47377416)
chr3 (361-410)||(48022320-48022369)
chr3 (356-388)||(14160279-14160311)
chr3 (358-402)||(35492807-35492851)
[»] chr4 (11 HSPs)
chr4 (348-402)||(48955306-48955360)
chr4 (356-402)||(34595937-34595983)
chr4 (354-416)||(44909824-44909886)
chr4 (356-402)||(49473659-49473705)
chr4 (353-402)||(7230294-7230343)
chr4 (356-413)||(19908695-19908752)
chr4 (361-410)||(19997370-19997419)
chr4 (353-418)||(29908054-29908119)
chr4 (357-402)||(36071158-36071203)
chr4 (359-411)||(46409485-46409537)
chr4 (356-388)||(54534857-54534889)
[»] chr7 (10 HSPs)
chr7 (361-410)||(24483904-24483953)
chr7 (354-422)||(39926537-39926605)
chr7 (356-402)||(46987100-46987146)
chr7 (365-422)||(23863710-23863767)
chr7 (354-411)||(27270240-27270297)
chr7 (376-421)||(35666298-35666343)
chr7 (358-402)||(2618693-2618737)
chr7 (346-402)||(29237548-29237604)
chr7 (354-418)||(32896463-32896527)
chr7 (356-388)||(48837895-48837927)
[»] chr6 (5 HSPs)
chr6 (356-423)||(2726418-2726485)
chr6 (353-419)||(8629694-8629760)
chr6 (348-402)||(12276224-12276278)
chr6 (356-418)||(31971527-31971589)
chr6 (358-411)||(14679130-14679183)
[»] chr5 (8 HSPs)
chr5 (358-413)||(43108572-43108627)
chr5 (356-418)||(11637573-11637635)
chr5 (356-398)||(22901977-22902019)
chr5 (358-411)||(11647202-11647255)
chr5 (358-391)||(25604003-25604036)
chr5 (355-424)||(31545863-31545932)
chr5 (357-401)||(14862074-14862118)
chr5 (358-402)||(16752505-16752549)
[»] scaffold0238 (1 HSPs)
scaffold0238 (356-413)||(25392-25449)
[»] scaffold0012 (1 HSPs)
scaffold0012 (367-412)||(119966-120011)
[»] scaffold0006 (1 HSPs)
scaffold0006 (367-412)||(210090-210135)
[»] scaffold1149 (1 HSPs)
scaffold1149 (354-418)||(2330-2394)
[»] scaffold0126 (1 HSPs)
scaffold0126 (357-413)||(34890-34946)
[»] scaffold0040 (1 HSPs)
scaffold0040 (358-402)||(53780-53824)
[»] scaffold0026 (1 HSPs)
scaffold0026 (358-402)||(75339-75383)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 35757797 - 35757484
Alignment:
Q  1 cagataaagaccaaaaacatctactacatccctaaaccatcttagatgtttagacaacttacccatgccgactaccctcttcacattgttgatacatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35757797 cagataaagaccaaaaacatctactacatccctaaaccatcttagatgtttagacaacttacccatgccgactatcctcttcacattgttgatacatttg 35757698  T
Q  101 agtgattttgcacgtcccnnnnnnngaaaa------tggaaacgtaaatacaatcacattttaccatataaatatt-gaagtgatgccccaacaacacat 193  Q
    ||||||||||||||||||        ||||      |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  35757697 agtgattttgcacgtcccgaaaaaaaaaaagcaaaatggaaacgtagatacaatcacattttaccatataaatatttgaagtgatgccccaacaactcat 35757598  T
Q  194 cccaagagagatggcatgaaaaaacatttaattaatgttattttgtctacaaccattactctttttgtagctcttacatgtagacacttcgcatttctct 293  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  35757597 cccaggagagatggcatgaaaaaacatttaattaatgttattttgtctataaccattactctttttgtagctcttacatgaagacacttcacatttctct 35757498  T
Q  294 tcacatattatacc 307  Q
    ||||||||||||||    
T  35757497 tcacatattatacc 35757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 35757444 - 35757348
Alignment:
Q  346 tagtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgacttcatctctctttctatcac 442  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  35757444 tagtgtgcgaggttcgaacctcagactttgcatatattatgcactgcccctaccaaccgagttaagcttacgatgacttcatctctctttctatcac 35757348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 21497730 - 21497660
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgact 423  Q
    |||||||  |||| ||||| |||||||||||||||| ||  |||||||||||| ||||||| |||||||||    
T  21497730 cgaggtttaaacctcgaaccttgcatatattatgcattgttcttaccaaccgagttaagctcacgatgact 21497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 12124607 - 12124559
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||||| || |||||||||||||||| || ||||||||||    
T  12124607 gaggttcgaaccccggaccttgcatatattatgcattgtccttaccaac 12124559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 40967369 - 40967440
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgactt 424  Q
    ||||||| ||||| | ||| |||||||||||||||| || ||||| |||| || ||||||| ||||||||||    
T  40967369 cgaggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacgatgactt 40967440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 24593436 - 24593390
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||| || |||||||||||||||| || ||||||||||    
T  24593436 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaac 24593390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 9547410 - 9547479
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgacttc 425  Q
    |||| ||||||| ||| |||||||||||||||| || || || |||| || ||||||||| |||||||||    
T  9547410 ggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaagcttatgatgacttc 9547479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 20120727 - 20120768
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| |||||||||||||||| || ||||||||||    
T  20120727 gaaccccgaaccttgcatatattatgcattgtccttaccaac 20120768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 37320518 - 37320575
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    |||||||||| ||||| |||||||||||||||| || | |||||||| || |||||||    
T  37320518 ggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagct 37320575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 4056853 - 4056801
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccga 405  Q
    |||| ||||||| ||| || |||||||||||||||| || |||||||||||||    
T  4056853 cgagattcgaactccggaccttgcatatattatgcattgtccttaccaaccga 4056801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 12124746 - 12124698
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| ||| || |||||||||||||||| || ||||||||||    
T  12124746 gaggttcgaactccggaccttgcatatattatgcattgtccttaccaac 12124698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 35727496 - 35727440
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    ||||||||||| ||| |||||||||||||||| ||  ||||||||| || |||||||    
T  35727496 gttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagct 35727440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 36264480 - 36264512
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||| ||||||||||||||||||||||||||||    
T  36264480 ggtttgaaccccgaactttgcatatattatgca 36264512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 39090932 - 39090900
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||||||| ||||||||||||||||||||||||    
T  39090932 ggttcgaatcccgaactttgcatatattatgca 39090900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 27750895 - 27750951
Alignment:
Q  346 tagtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||    
T  27750895 tagtgttcgaggttcgaaccccggaccttgcatatattatgcactgtccttaccaac 27750951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 7679965 - 7679901
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacg 417  Q
    |||| |||||||||||||| |||||||||||||||| || | || ||||| || |||||||||||    
T  7679965 cgagattcgaaccccgaaccttgcatatattatgcattgtctttgccaactgagttaagcttacg 7679901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 26799238 - 26799178
Alignment:
Q  362 aaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgac 422  Q
    |||||||||| |||||||| ||||||| || || ||||||| || ||||||||||||||||    
T  26799238 aaccccgaaccttgcatattttatgcattgtccctaccaactgagttaagcttacgatgac 26799178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 32192954 - 32192908
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||||||||| |||||||||||||||| || || |||||||    
T  32192954 ggttcgaaccccgaaccttgcatatattatgcattgtccataccaac 32192908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 8717473 - 8717522
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||| ||||||||||| |||||||||||||||| || || |||||||    
T  8717473 cgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaac 8717522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 33996124 - 33996075
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaa 410  Q
    |||||||||||||||||||||||||||| || |  ||||||| |||||||    
T  33996124 gaaccccgaactttgcatatattatgcattgtctctaccaactgatttaa 33996075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 4830066 - 4830022
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||||||| |||||||||||||||| || || |||||||    
T  4830066 ttcgaaccccgaaccttgcatatattatgcattgtccataccaac 4830022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 19778123 - 19778079
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| || |||||||||||||||| || ||||||||||    
T  19778123 ttcgaaccccggaccttgcatatattatgcattgtccttaccaac 19778079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 27129144 - 27129096
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||| || ||||||||||||||||||||| ||  |||||||||    
T  27129144 gaggttcgaatcctgaactttgcatatattatgcaatgttcttaccaac 27129096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 35102665 - 35102729
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacg 417  Q
    ||||||||||||| || |  |||||||||||||||| || |||||||||| ||| |||| |||||    
T  35102665 cgaggttcgaacctcggatcttgcatatattatgcattgaccttaccaactgatctaagtttacg 35102729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 12500981 - 12500937
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  12500981 ttcgaaccccgaactttgcatatattatgcattgtccttaccaac 12500937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 32874392 - 32874436
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  32874392 ttcgaaccccgaactttacatatattatgcattgcccttaccaac 32874436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 1408493 - 1408436
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagctta 415  Q
    |||||||  |||||||||||||||||||||| || |||||||||| || |||||||||    
T  1408493 ttcgaacttcgaactttgcatatattatgcattgtccttaccaactgagttaagctta 1408436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 42841138 - 42841194
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    |||||||||||  |||||||||||| ||||||||| |||||||||| || |||||||    
T  42841138 gttcgaaccccagactttgcatataatatgcactgtccttaccaactgagttaagct 42841194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 19262908 - 19262954
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||||||||||||||| ||||||| || ||||| ||||    
T  19262908 ggttcgaaccccgaactttgcatatgttatgcattgtccttatcaac 19262954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 27533303 - 27533241
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    |||| ||||||||||| |||||||||||||||| || || ||||||| ||| |||||| ||||    
T  27533303 ggtttgaaccccgaaccttgcatatattatgcattgtccctaccaactgatctaagctcacga 27533241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 9639810 - 9639863
Alignment:
Q  348 gtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaa 401  Q
    |||| |||||||||||| ||| || |||||||||||||||| || |||||||||    
T  9639810 gtgtccgaggttcgaactccggaccttgcatatattatgcattgtccttaccaa 9639863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 18056717 - 18056778
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacg 417  Q
    |||||||||| |  || |||||||||||||||| || |||||||||| || |||||||||||    
T  18056717 ggttcgaacctcacacattgcatatattatgcattgtccttaccaactgagttaagcttacg 18056778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 48898498 - 48898539
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| ||||||||||||||||||| | ||||||||    
T  48898498 gaaccccgaaccttgcatatattatgcactgtctttaccaac 48898539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 1090856 - 1090888
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||||||||||||||||||||| ||||||||||    
T  1090856 ggttcgaaccccgaactttgcaaatattatgca 1090888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 5031157 - 5031201
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||||||||||| |||||||||||| || ||||| ||||    
T  5031157 ttcgaaccccgaactttgtatatattatgcattgtccttatcaac 5031201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 10132444 - 10132500
Alignment:
Q  355 aggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaag 411  Q
    |||||||||||||  || |||||||||||||||| || |||||||||| ||| ||||    
T  10132444 aggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgatctaag 10132500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 28455356 - 28455408
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaa 410  Q
    |||||||||| |||||||||||||||||||| || |  ||||||| |||||||    
T  28455356 ttcgaaccccaaactttgcatatattatgcattgtctctaccaactgatttaa 28455408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 38448869 - 38448913
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| || |||||||||||||||| || ||||||||||    
T  38448869 ttcgaaccccggaccttgcatatattatgcattgtccttaccaac 38448913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 40613086 - 40613034
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccga 405  Q
    |||| ||||||||||| || |||||||||||||||| || |||||||| ||||    
T  40613086 cgagattcgaaccccggaccttgcatatattatgcattgtccttaccagccga 40613034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 43896822 - 43896854
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||||||| ||||||||||||||||||||||||    
T  43896822 ggttcgaatcccgaactttgcatatattatgca 43896854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 45481552 - 45481508
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaa 401  Q
    |||||||||||| || |||||||||||||||| || |||||||||    
T  45481552 gttcgaaccccggaccttgcatatattatgcattgtccttaccaa 45481508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 52119436 - 52119369
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgact 423  Q
    |||||||||||||||| |||||||||||||||| || |||||||||| ||  |||||| | |||||||    
T  52119436 ggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagctcaagatgact 52119369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 10926524 - 10926467
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    ||||||||||| |||||||||||||||| || |||||||||| ||  |||||||||||    
T  10926524 gaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagcttacga 10926467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 397
Target Start/End: Complemental strand, 47039485 - 47039446
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgccctta 397  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  47039485 ttcgaaccccgaactttgcatatattatgcattgtcctta 47039446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 14741862 - 14741808
Alignment:
Q  348 gtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||| |||||||||||| || ||| |||||||||||||||| || ||||||||||    
T  14741862 gtgtccgaggttcgaactccaaaccttgcatatattatgcattgtccttaccaac 14741808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 53208030 - 53207984
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||    
T  53208030 ggttcgaaccccagaccttgcatatattatgcattgcccttaccaac 53207984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 54230100 - 54230146
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||||| ||| |||||||||||||||| || ||||||||||    
T  54230100 ggttcgaaccccaaaccttgcatatattatgcattgtccttaccaac 54230146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 759592 - 759641
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||| |||||| ||||||||||||||||||||| || || |||||||    
T  759592 cgaggtttgaaccctgaactttgcatatattatgcattgtccctaccaac 759641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 21914072 - 21914129
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    ||||||||||||  || |||||||||||||||| || |||||||||| || |||||||    
T  21914072 ggttcgaaccccataccttgcatatattatgcattgtccttaccaactgagttaagct 21914129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 39779084 - 39779035
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccga 405  Q
    |||| ||||||||||| |||||||||||||||| || || ||||||||||    
T  39779084 ggtttgaaccccgaaccttgcatatattatgcattgtccataccaaccga 39779035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 47377355 - 47377416
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgac 422  Q
    ||||| ||||| ||| |||||||||||| || |||||||||| || ||||||| ||||||||    
T  47377355 gaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcacgatgac 47377416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 48022320 - 48022369
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaa 410  Q
    |||||||||||||||||||||||||||| || |  ||||||| |||||||    
T  48022320 gaaccccgaactttgcatatattatgcattgtctctaccaactgatttaa 48022369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 14160279 - 14160311
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    ||||||||||||| |||||||||||||||||||    
T  14160279 ggttcgaaccccggactttgcatatattatgca 14160311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 35492851 - 35492807
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||    
T  35492851 ttcgaacctcgaactttgcatatattatgcattgttcttaccaac 35492807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 48955360 - 48955306
Alignment:
Q  348 gtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||| |||||||||||||||| ||||||||||||||| ||| || ||||||||||    
T  48955360 gtgttcgaggttcgaaccccggactttgcatatattacgcattgtccttaccaac 48955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 34595937 - 34595983
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||| ||||||||||||| ||||||||||||| || ||||||||||    
T  34595937 ggttcaaaccccgaactttacatatattatgcattgtccttaccaac 34595983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 44909886 - 44909824
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttac 416  Q
    |||||| |||||| |||||||||||||| |||||| || | |||||||| || ||||||||||    
T  44909886 gaggtttgaaccctgaactttgcatatactatgcattgtctttaccaactgagttaagcttac 44909824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 49473705 - 49473659
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||| || |||||||||||||||| || ||||||||||    
T  49473705 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaac 49473659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 7230343 - 7230294
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||| |||||||| || |||||||||||||||| || ||||||||||    
T  7230343 cgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaac 7230294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 19908752 - 19908695
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    |||||||||| || || |||||||||||||||| || |||||||||| || |||||||    
T  19908752 ggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagct 19908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 19997370 - 19997419
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaa 410  Q
    |||||||||||||||||||||||||||| || |  ||||||| |||||||    
T  19997370 gaaccccgaactttgcatatattatgcattgtctctaccaactgatttaa 19997419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 29908119 - 29908054
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    ||||||| |||| ||| || |||||||||||||||| || |||||||||| || ||||||| ||||    
T  29908119 cgaggtttgaactccggaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 29908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 36071203 - 36071158
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||||| || ||||||||||||| || ||||||||||    
T  36071203 gttcgaaccccgaaccttacatatattatgcattgtccttaccaac 36071158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 46409485 - 46409537
Alignment:
Q  359 tcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaag 411  Q
    |||||||| ||||||||||||||||||||| || | |||||||| || |||||    
T  46409485 tcgaaccctgaactttgcatatattatgcattgtctttaccaactgagttaag 46409537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 54534889 - 54534857
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||||||||||||||||||||||||| ||||||    
T  54534889 ggttcgaaccccgaactttgcatataatatgca 54534857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 24483904 - 24483953
Alignment:
Q  361 gaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaa 410  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||    
T  24483904 gaaccccgaactttgcatatattatgcactgtctctaccaactgatttaa 24483953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 39926537 - 39926605
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgac 422  Q
    |||||| ||||||||||| |||||||||||||||| || ||||| |||| ||  |||||| ||||||||    
T  39926537 gaggtttgaaccccgaacattgcatatattatgcattgtccttatcaactgagctaagctcacgatgac 39926605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 46987146 - 46987100
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||||| || |||||||||||||||| || ||||||||||    
T  46987146 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaac 46987100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 23863710 - 23863767
Alignment:
Q  365 cccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgac 422  Q
    |||||||||||| ||||||||||| || ||||||||||  | ||||||| ||||||||    
T  23863710 cccgaactttgcgtatattatgcattgtccttaccaactaagttaagctcacgatgac 23863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 27270297 - 27270240
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaag 411  Q
    ||||||||||| |||||| |||||||||||||||| || || ||||||| || |||||    
T  27270297 gaggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaag 27270240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 35666343 - 35666298
Alignment:
Q  376 catatattatgcactgcccttaccaaccgatttaagcttacgatga 421  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||||    
T  35666343 catatattatgcattgtccttaccaaccgagttaagctcacgatga 35666298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 2618737 - 2618693
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| || |||||||||||||||| || ||||||||||    
T  2618737 ttcgaaccccggaccttgcatatattatgcattgtccttaccaac 2618693  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 29237548 - 29237604
Alignment:
Q  346 tagtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||| |||||||||||||| | || |||||||||||||||| ||  |||||||||    
T  29237548 tagtgtccgaggttcgaaccctggaccttgcatatattatgcattgttcttaccaac 29237604  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 32896463 - 32896527
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    |||||||||||||| ||  ||| |||||||||||| || |||| ||||| || ||||||||||||    
T  32896463 gaggttcgaaccccaaatcttgtatatattatgcattgtccttcccaactgagttaagcttacga 32896527  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 48837927 - 48837895
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgca 388  Q
    |||||||||||| ||||||||||||||||||||    
T  48837927 ggttcgaaccccaaactttgcatatattatgca 48837895  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 2726418 - 2726485
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgact 423  Q
    ||||||||||||| || |||||||||||||||| || || ||||||| || ||||| |||||| ||||    
T  2726418 ggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagttaagtttacgaggact 2726485  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 8629694 - 8629760
Alignment:
Q  353 cgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgat 419  Q
    ||||||| ||||||||||| |||||||||||||||| || || ||||||  || ||||||| |||||    
T  8629694 cgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctcacgat 8629760  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 12276224 - 12276278
Alignment:
Q  348 gtgtgcgaggttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||| |||| |||||| |||||||||||||||||||||||| ||  |||||||||    
T  12276224 gtgtccgagattcgaatcccgaactttgcatatattatgcattgttcttaccaac 12276278  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 31971589 - 31971527
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    |||| ||||| || || |||||||||||||||| || |||||||||| || ||||||||||||    
T  31971589 ggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacga 31971527  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 14679183 - 14679130
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaag 411  Q
    |||||| ||| ||| |||||||||||||||| || ||||||||||||| |||||    
T  14679183 ttcgaaacccaaaccttgcatatattatgcattgtccttaccaaccgagttaag 14679130  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 43108627 - 43108572
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    ||||||||| |||| |||||||||||||||| || |||||||||| || |||||||    
T  43108627 ttcgaaccctgaaccttgcatatattatgcattgtccttaccaactgagttaagct 43108572  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 11637573 - 11637635
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    |||||||||||||||| |||||||| ||||||| || || ||||||| || ||||||| ||||    
T  11637573 ggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacga 11637635  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 22902019 - 22901977
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttac 398  Q
    |||||||| |||||||||||||||||||||||| || ||||||    
T  22902019 ggttcgaatcccgaactttgcatatattatgcattgtccttac 22901977  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 11647255 - 11647202
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaag 411  Q
    |||||||||| ||| |||||||||||||||| || |||||||||| || |||||    
T  11647255 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagttaag 11647202  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 25604003 - 25604036
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactg 391  Q
    |||||||||||||| |||||||||||||||||||    
T  25604003 ttcgaaccccgaaccttgcatatattatgcactg 25604036  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 31545932 - 31545863
Alignment:
Q  355 aggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacgatgactt 424  Q
    |||||||||||  |||| |||||||||||||||| |  ||| |||||| || ||||||| ||||||||||    
T  31545932 aggttcgaaccttgaaccttgcatatattatgcattatcctaaccaactgagttaagctcacgatgactt 31545863  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 14862118 - 14862074
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaa 401  Q
    ||||||||||| |||||||||||||||||||| ||  ||||||||    
T  14862118 gttcgaaccccaaactttgcatatattatgcattgttcttaccaa 14862074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 16752505 - 16752549
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    |||||||||||||  |||||||||||||||| || ||||||||||    
T  16752505 ttcgaaccccgaatcttgcatatattatgcattgtccttaccaac 16752549  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 25449 - 25392
Alignment:
Q  356 ggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    ||||||||||| | || |||||||||||||||| || |||||||||| || |||||||    
T  25449 ggttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagttaagct 25392  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 119966 - 120011
Alignment:
Q  367 cgaactttgcatatattatgcactgcccttaccaaccgatttaagc 412  Q
    ||||| |||||||||||||||| || ||||||||||||| ||||||    
T  119966 cgaaccttgcatatattatgcattgtccttaccaaccgagttaagc 120011  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 210090 - 210135
Alignment:
Q  367 cgaactttgcatatattatgcactgcccttaccaaccgatttaagc 412  Q
    ||||| |||||||||||||||| || ||||||||||||| ||||||    
T  210090 cgaaccttgcatatattatgcattgtccttaccaaccgagttaagc 210135  T

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Target: scaffold1149 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 2394 - 2330
Alignment:
Q  354 gaggttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagcttacga 418  Q
    |||||| ||||||| ||| |||||||||||||||| || || ||||||||||  |||||| ||||    
T  2394 gaggtttgaaccccaaaccttgcatatattatgcattgtccctaccaaccgagctaagctcacga 2330  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 34890 - 34946
Alignment:
Q  357 gttcgaaccccgaactttgcatatattatgcactgcccttaccaaccgatttaagct 413  Q
    |||||||||| | || |||||||||||||||| || |||||||||| || |||||||    
T  34890 gttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagttaagct 34946  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 53780 - 53824
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| || |||||| |||||||||||| ||||||||||    
T  53780 ttcgaaccccggaccttgcatgtattatgcactgtccttaccaac 53824  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 75383 - 75339
Alignment:
Q  358 ttcgaaccccgaactttgcatatattatgcactgcccttaccaac 402  Q
    ||||||||||| || |||||||||||||||| || ||||||||||    
T  75383 ttcgaaccccggaccttgcatatattatgcattgtccttaccaac 75339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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