View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_24 (Length: 453)
Name: NF2324_high_24
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 50229435 - 50229016
Alignment:
| Q |
16 |
gcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggcnnnnnnnacaggttaacatggttgattgatgact |
115 |
Q |
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| T |
50229435 |
gcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggctttttttacaggttaacatggttgattgatgact |
50229336 |
T |
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| Q |
116 |
ttggttacttaatctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatannnnnnnctcatttggtt |
215 |
Q |
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| T |
50229335 |
ttggttacttagtctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatatttttttctcatttggtt |
50229236 |
T |
|
| Q |
216 |
tggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacgtggagtggtgcct |
315 |
Q |
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| T |
50229235 |
tggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacatggagtggtgctt |
50229136 |
T |
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| Q |
316 |
gctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttggaatggcgttt |
415 |
Q |
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| T |
50229135 |
gctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttggaatggcgttt |
50229036 |
T |
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| Q |
416 |
gtcggtggttgggtattgtt |
435 |
Q |
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| T |
50229035 |
gtcggtggttgggtattgtt |
50229016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 39380885 - 39380748
Alignment:
| Q |
295 |
tttcaacgtggagtggtgcctgctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagttttta |
394 |
Q |
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||||| ||||||||| |||||| |||||||||| |||| | |||||| |||||||||||||||||| ||| | | | ||||| ||||||| |
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| T |
39380885 |
tttcaccgtggagtgttgcctgatacttctttgttttgttcaggagggtgtgggaaggaggaaacaactaattgtctttaattaagatgtgatgttttta |
39380786 |
T |
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| Q |
395 |
gtaatgtttggaatggcgtttgtcggtggttgggtatt |
432 |
Q |
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| T |
39380785 |
gtaatgtttggaatggtgtttttcgatggttgggtatt |
39380748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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