View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_high_25 (Length: 453)
Name: NF2324_high_25
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_25 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 22493062 - 22492620
Alignment:
| Q |
11 |
cagagagaatcgaaccttattcaaaacttttaagagaagtacagtcgcaagtctcaagccaataccactataccaacccaattacgtttgaaacaacatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22493062 |
cagagagaatcgaaccttattcaaaacttttaagagaagtacagtcgcaagtctcaagccaataccactataccaacccaattacgtttgaaacaacatt |
22492963 |
T |
|
| Q |
111 |
attaataactaatgtttacagtgcacaagtaagataaattttacacaaattagttttcactactaattcaataaacctcatctcatcactaattaattaa |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22492962 |
attaataactaatgtttacggtgcacaagtaagataaattttacacaaattagttttcactactaattcaataaacctcatctcatcactaattaattaa |
22492863 |
T |
|
| Q |
211 |
aacaagatgtgacattttgaatcattaatagaaaatgattttactaacctgcatggtaagcaatggtagcaccagcactttttcccataagataacactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22492862 |
aacaagatgtgacattttgaatcattaatagaaaatgattttactaacctgcatggtaagcaatggtagcaccagcactttttcccataagataacactt |
22492763 |
T |
|
| Q |
311 |
ggaataatcaacataacatctcaaccactcatcatcactattccttatccaaaacaaagcctccatagcatcatcatatgctgcaggtaaacgatgctcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22492762 |
agaataatcaacataacatctcaaccactcatcatcactattccttatccaaaacaaagcctccatagcatcatcatatgctgcaggtaaacgatgctcc |
22492663 |
T |
|
| Q |
411 |
ggtgcaagacggtactcaacagagacaacaaaaacaccaatct |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22492662 |
ggtgcaagacggtactcaacagagacaacaaaaacaccaatct |
22492620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 22415810 - 22415743
Alignment:
| Q |
258 |
cctgcatggtaagcaatggtagcaccagcactttttcccataagataacacttggaataatcaacata |
325 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||| || |||||||| ||||| |||||||| |
|
|
| T |
22415810 |
cctgcatggtatgcaatggtagctccagcactattacccattaggtaacacttagaatagtcaacata |
22415743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University