View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_26 (Length: 447)
Name: NF2324_high_26
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4171043 - 4170917
Alignment:
| Q |
1 |
ataattaaaccaaccaaaattagtccttccttccattggagtatgaatttagtttgccagctgtcaattacttcaatctatctatcaattactagttgaa |
100 |
Q |
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| T |
4171043 |
ataattaaaccaaccaaaattagtccttccttccattggagtatgaatttagtttgccagctgtcaattacttcaatctatctatcaattactagttgaa |
4170944 |
T |
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| Q |
101 |
taatctgaggtgtcatttctattttat |
127 |
Q |
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| T |
4170943 |
taatctgaggtgtcatttctattttat |
4170917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 332 - 431
Target Start/End: Complemental strand, 4170736 - 4170637
Alignment:
| Q |
332 |
atcaatttatcaaaccctataacgcaattcgcttatcgcattgctttttcaattttcctcatccaggtcttttaatttacgctcgcgtttcgttaccaac |
431 |
Q |
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| T |
4170736 |
atcaatttatcaaaccctataacgcaattcgcttatcgcattgctttttcaattttcctcatccaggtcttttaatttacgctcgcgtttcgttaccaac |
4170637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 4170882 - 4170755
Alignment:
| Q |
163 |
tttatcgtgtctctagagacttcgattctgattccaaatccctcacacctccactatattttaccccctct-ccctccccttcaccttcacactc-ctcg |
260 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | | |
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| T |
4170882 |
tttattgtgtctctagagccttcgattctgattccaaatccctcacacctccactatattttaccccctctcccctccccttcaccttcaccttcacact |
4170783 |
T |
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| Q |
261 |
attcgattccatttcttctccaggtacg |
288 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4170782 |
cctcgattccatttcttctccaggtacg |
4170755 |
T |
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