View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_high_27 (Length: 444)

Name: NF2324_high_27
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_high_27
NF2324_high_27
[»] chr8 (11 HSPs)
chr8 (1-260)||(479368-479627)
chr8 (322-425)||(479689-479792)
chr8 (44-246)||(473937-474139)
chr8 (71-245)||(466498-466672)
chr8 (327-419)||(466743-466835)
chr8 (44-128)||(454763-454850)
chr8 (140-236)||(445767-445863)
chr8 (179-245)||(454890-454956)
chr8 (332-412)||(455041-455121)
chr8 (331-375)||(474232-474276)
chr8 (327-425)||(446009-446107)
[»] chr2 (2 HSPs)
chr2 (71-248)||(27493754-27493931)
chr2 (332-417)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 479368 - 479627
Alignment:
Q  1 taaatttcttattctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggcta 100  Q
    |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479368 taaatttcttcttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggcta 479467  T
Q  101 tggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479468 tggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgc 479567  T
Q  201 tattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctctttcattgc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  479568 tattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctatttcattgc 479627  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 322 - 425
Target Start/End: Original strand, 479689 - 479792
Alignment:
Q  322 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479689 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 479788  T
Q  422 taat 425  Q
    ||||    
T  479789 taat 479792  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 473937 - 474139
Alignment:
Q  44 tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac 143  Q
    ||||||||||||||||||||||||||||||||||||| ||  | |||||||||| |||||| |||||| ||||||||||||||||| ||  | ||||||     
T  473937 tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat 474036  T
Q  144 aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccggg 243  Q
    |||| |     ||||| ||||| |||| || |   |||||||||| ||||||  |||| ||||||||||| ||||||||||  |||||||||| || |||    
T  474037 aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctggg 474136  T
Q  244 tac 246  Q
    |||    
T  474137 tac 474139  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 466498 - 466672
Alignment:
Q  71 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 170  Q
    |||||||||||||||| |||||||| | |||| |||||||| |||| |||| |||||||  |  | ||||||||||||| | | ||||| ||||| ||||    
T  466498 acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag 466597  T
Q  171 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 245  Q
     || |||||||||||||| ||||||  |||| ||||||||||| ||||||||||  | |||||||| || |||||    
T  466598 tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 466743 - 466835
Alignment:
Q  327 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct 419  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| |||||||||||||    
T  466743 ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct 466835  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 454763 - 454850
Alignment:
Q  44 tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg 128  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||| ||||    
T  454763 tttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg 454850  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 445767 - 445863
Alignment:
Q  140 gcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttattt 236  Q
    |||||||||||| | ||||| ||||| |||||||   | |||||||| |||||||| ||||| ||||||||||| ||||||||||  ||||||||||    
T  445767 gcacaagaattgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt 445863  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 454890 - 454956
Alignment:
Q  179 tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 245  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  454890 tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 454956  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 455041 - 455121
Alignment:
Q  332 aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 412  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  455041 aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 455121  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 474232 - 474276
Alignment:
Q  331 taggagaaattctggctcttattccttaaatttaaggagtttttc 375  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  474232 taggagaaactctgcctcttattccttaaatttaaggagtttttc 474276  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 446009 - 446107
Alignment:
Q  327 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaat 425  Q
    |||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| |||||||||    
T  446009 ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaat 446107  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 248
Target Start/End: Complemental strand, 27493931 - 27493754
Alignment:
Q  71 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 170  Q
    |||||||||||||| | |||||||||| |||| | |||||| |||| |||||| |||| |||  | |||| |||||||||||| ||||| ||||||||||    
T  27493931 acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag 27493832  T
Q  171 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt 248  Q
     || | | |||||||||| || ||  ||||| ||||||||||| |||||||||||||||||||||| || ||||||||    
T  27493831 tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt 27493754  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
Q  332 aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct 417  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| |||||    
T  27493624 aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct 27493536  T

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