View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_high_28 (Length: 441)
Name: NF2324_high_28
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 43633865 - 43633504
Alignment:
| Q |
14 |
ttcccatgttggtaagtggctacagaatctcgtgatctaaagtctatcttagatgcacattccactnnnnnnnnnnnnnnnnnnnctcatcatattaaaa |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43633865 |
ttcccatgttcttaagtggctacagaatctcgtgatctaaagtctatcttagatgcacattccactaaaacaaaaaaggaaaaaactcatcatattaaaa |
43633766 |
T |
|
| Q |
114 |
agaagatagttgggattgaaggaatatttctatgatacttttgaatttctgaaaatattggtaggtaaattagtcacaaaatgagtcacaccattcaagt |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633765 |
agaagatagttgggattataggaatatttctatgatacttttgaatttctgaaaatattggtaggtaaattagtcacaaaatgagtcacaccattcaagt |
43633666 |
T |
|
| Q |
214 |
tcatgatctcattctactcttatgtgtccttttttcgaataatagaaaagaaatgcttgtgctcatgccacatgtttagaacacatgggaattaaacatt |
313 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633665 |
tcatgatctcattccactcttatgtgtccttttttcgaataatagaaaagaaatgcttgtgctcatgccacatgtttagaacacatgggaattaaacatt |
43633566 |
T |
|
| Q |
314 |
aaactagaaaagcacactttaatttagtacatggttgacatatatcatatatgacaatgaga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633565 |
aaactagaaaagcacactttaatttagtacatggttgacatatatcatatatgacaatgaga |
43633504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 43633491 - 43633441
Alignment:
| Q |
392 |
catgtccacttcca-ccttcctctcctttccttttccctttgcttctccac |
441 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
43633491 |
catgtccacttctaaccttcctctcctttccttttctctttgcctctccac |
43633441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University