View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_32 (Length: 421)
Name: NF2324_high_32
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 26315391 - 26315783
Alignment:
| Q |
14 |
gaacaaaaacaaaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttcaaaac |
113 |
Q |
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| T |
26315391 |
gaacaaaaacaaaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggatagttctagggtgtataggaatcatcttcaaaac |
26315490 |
T |
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| Q |
114 |
ttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagnnnnnnnnnnnnnnnnnnngagggttagataatat |
213 |
Q |
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| T |
26315491 |
ttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagcaaaaacaacaaaacaaaagagggttagttaatat |
26315590 |
T |
|
| Q |
214 |
ttatgtcatataaacacaatgtag-----attatattatattatattagaatagattagagggggcaaagagatatatcatttgnnnnnnnntagagcat |
308 |
Q |
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| T |
26315591 |
ttatgtcatataaacacaatgtagattatattatattatattatattagaatagattagagggggcaaaaagatatatcatttgaaaaaaaatagagcat |
26315690 |
T |
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| Q |
309 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaaccta |
401 |
Q |
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| T |
26315691 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaaccta |
26315783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 43110533 - 43110670
Alignment:
| Q |
40 |
tatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttctattgtttttc |
139 |
Q |
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| T |
43110533 |
tatacataccctaaagtataggctgctttaatggaagggattattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttcaatggtttttc |
43110632 |
T |
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| Q |
140 |
cattagaatgaagctccatcatcatcctatcctataaa |
177 |
Q |
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| T |
43110633 |
cattagaattaagctccatcatcatcctatcctataaa |
43110670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 43110799 - 43110889
Alignment:
| Q |
309 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacc |
399 |
Q |
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| T |
43110799 |
aaaacacaaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacc |
43110889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5249978 - 5249925
Alignment:
| Q |
119 |
caatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcct |
172 |
Q |
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| T |
5249978 |
caatctcttcaatggttttaccatttgaatgaatctccatcatcatcctatcct |
5249925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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