View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_35 (Length: 411)
Name: NF2324_high_35
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 203 - 407
Target Start/End: Complemental strand, 48489289 - 48489085
Alignment:
| Q |
203 |
tacctctttttcttaattgttccgtgaggtaaatgaggacgatgtggggccctcaaaacataaatagttacaacaaaaatgtttttgtgtctcccattca |
302 |
Q |
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| T |
48489289 |
tacctctttttcttaattgttccgtgaggtaaatgaggacgatgtggggccctcaaaacataaatagttacaacaaaaatgtttttgtgtctcccattca |
48489190 |
T |
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| Q |
303 |
agctaaaaccacctacttctacaaactagtacacaactatcacgttactttgttcacttcattttcaccgactttttcattcattcttccaaattcatct |
402 |
Q |
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| T |
48489189 |
agctaaaaccacctacttctacaaactagtacacaactatcacgttactttgttcacttcactttcaccgactctttcattcattcttccaaattcatct |
48489090 |
T |
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| Q |
403 |
cactc |
407 |
Q |
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||||| |
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| T |
48489089 |
cactc |
48489085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 48489864 - 48489675
Alignment:
| Q |
1 |
attactgccaagtagaagataaatcgtcatttttatcttttgagagatgttaacnnnnnnnnnnnnn--cataactgaaacaatttttatgcatgttaat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
48489864 |
attactgccaagtagaagataaatcgtcatttttatcctttgagagatgttaacaaaaaaaaaaaaagacataactgaaacactttttatgcatgttaat |
48489765 |
T |
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| Q |
99 |
ttattattaaaatgtatcttgaaaatgaggccttaatgaaaatgacagtgttccacgtgaatgattgatgatttatacgataaaattaaa |
188 |
Q |
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| T |
48489764 |
ttattattaaaatgtatcttgaaaatgaggccttaatgaaaatgacagtgttgcacgtgaatgattgatgatttataagataaaagtaaa |
48489675 |
T |
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