View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_40 (Length: 381)
Name: NF2324_high_40
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 3558301 - 3558652
Alignment:
| Q |
19 |
gatttggggtaccaaccaagttgaaatgtattttcctcggtgcgctctattttttgcttatnnnnnnnn-tatagcatgaaaaagtacaatcaaatttta |
117 |
Q |
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| T |
3558301 |
gatttggggtaccaacctaattgaaatgtcttttcctcggtgcgctctattttttgcttataaaaaaaaatatagcatgaaaaagtacaatcaaatttta |
3558400 |
T |
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| Q |
118 |
tttctaatttttacatttaaattaaatgaaataaatacattttagctaatgttattaaatgaacattgttaaattttgttttggcaaaaaccaactcctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3558401 |
tttctaatttttacatttaaattaaatgaaataaatacattttagctaatgttattaaatgaacattgttaagttttgttttggcaaaaaccaactcctc |
3558500 |
T |
|
| Q |
218 |
ttcattttgatatttttgtactaactttttggtttagtcctatactaaactaattagttctttatgattttttcaggattcatgggcaatatgtaggatc |
317 |
Q |
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|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3558501 |
ttcattttgatattcttctactaattttttggtttagtcctatactaaactaattagttctttatgaatttttcaggattcatgggcaatatgtaggatc |
3558600 |
T |
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| Q |
318 |
ttcaagaaaaccaattccctttccatggtacaaaaagcattgtctcaccctt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3558601 |
ttcaagaaaaccaattccctttccatggtacaaaaagcattgtctcaccctt |
3558652 |
T |
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