View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_high_41 (Length: 381)

Name: NF2324_high_41
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_high_41
NF2324_high_41
[»] chr7 (6 HSPs)
chr7 (20-372)||(37580737-37581092)
chr7 (64-228)||(37480685-37480857)
chr7 (64-228)||(6778583-6778755)
chr7 (64-228)||(6774296-6774468)
chr7 (131-228)||(37476241-37476335)
chr7 (314-343)||(37466497-37466526)
[»] chr4 (3 HSPs)
chr4 (134-228)||(55118878-55118972)
chr4 (72-109)||(52791814-52791851)
chr4 (70-110)||(11160852-11160892)
[»] chr5 (1 HSPs)
chr5 (62-118)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (62-228)||(45071637-45071811)
[»] chr3 (1 HSPs)
chr3 (62-118)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 37581092 - 37580737
Alignment:
Q  20 ctgcctcctcttcattcggctttggactgaagttattctgactgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacagg 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37581092 ctgcctcctcttcgttcggctttggactgaagttattctgactgttaaacgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacagg 37580993  T
Q  120 taagc---aacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagc 216  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580992 taagcttcaacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagc 37580893  T
Q  217 cttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacctcaagatcattggaactcgcagactccaaaagcatagcgtta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37580892 cttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacctcaagatcattggaactcgcagactccaaaagcatagcctta 37580793  T
Q  317 tcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580792 tcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc 37580737  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 37480685 - 37480857
Alignment:
Q  64 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 152  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  37480685 ttaaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttg 37480784  T
Q  153 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    ||||  |||||||  |||||||| |||||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37480785 cagcaagaatgagaccgaaaagcttagcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37480857  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 6778755 - 6778583
Alignment:
Q  64 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 152  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  6778755 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacagactggcatgtaagatccagtagactcttgatattcaagtaatttg 6778656  T
Q  153 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    ||||  ||||||| ||||||||  || ||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  6778655 cagcaagaatgagatcgaaaagtgtatcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 6778583  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 6774468 - 6774296
Alignment:
Q  64 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttg 152  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   ||| || |||||||| ||||||| |||||    
T  6774468 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccaatagactcttgatattcaagtcatttg 6774369  T
Q  153 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    ||||  ||||||| ||||||||| ||| ||||| |||   |||||  |||||||| ||||||  ||||||||||||    
T  6774368 cagcaagaatgagatcgaaaagcgtagtctgatgaac---cttcacaaattcagcatcccaattcttaagatcatc 6774296  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 37476241 - 37476335
Alignment:
Q  131 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37476335  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 343
Target Start/End: Original strand, 37466497 - 37466526
Alignment:
Q  314 ttatcaaccttaacgaaatcagcatcccaa 343  Q
    ||||||||||||||||||||||||||||||    
T  37466497 ttatcaaccttaacgaaatcagcatcccaa 37466526  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 55118972 - 55118878
Alignment:
Q  134 ttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    ||||||||||||||| |||||||| ||| ||| |||  |||  || |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  55118972 ttgatgttcaagtaaattgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagcgtcccaagccttgagatcatc 55118878  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  72 cttgcgaatctcctccggcgtcttccccttgatcatgt 109  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  70 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 110  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 8992611 - 8992555
Alignment:
Q  62 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 118  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992611 tgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 45071637 - 45071811
Alignment:
Q  62 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatt 150  Q
    ||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   || || || |||||| | |||||| ||    
T  45071637 tgttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacaatctggcaggtaagatccagcaagcccttgatatccaagtagtt 45071736  T
Q  151 tgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 228  Q
    ||||||  ||||||| || |||||| |||||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  45071737 tgcagcaagaatgaggtcaaaaagcgtagcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 45071811  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 50915295 - 50915239
Alignment:
Q  62 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 118  Q
    ||||||| || || ||||| |||||||| |||||||| || ||||||||||||||||    
T  50915295 tgttaaaagtgtttcgaatttcctccggtgtcttccctttcatcatgtccgccacag 50915239  T

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