View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_42 (Length: 381)
Name: NF2324_high_42
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 9002608 - 9002962
Alignment:
| Q |
10 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
109 |
Q |
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| T |
9002608 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
9002707 |
T |
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| Q |
110 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagat |
209 |
Q |
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| T |
9002708 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagat |
9002807 |
T |
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| Q |
210 |
tggggccacatgagnnnnnnncattaacagtgagagctaagatataattaaatgtggtagataacaaaaagcaactaaaattataacaaatataaacagc |
309 |
Q |
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| T |
9002808 |
tggggccacatgagtttttttcattaacagtgagagctaagatataattaaatgtggtagataacaaaaagcaactaaaattataacaaatataaacaac |
9002907 |
T |
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| Q |
310 |
accataaatagattagttggatagctgaacaggtttgagctaagggttgaggagt |
364 |
Q |
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| T |
9002908 |
accataaatagattagttggatagctgaacaggtttgagctaagggttgaggagt |
9002962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 5130317 - 5130363
Alignment:
| Q |
282 |
aactaaaattataacaaatataaacagcaccataaatagattagttg |
328 |
Q |
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| T |
5130317 |
aactaaagttataacaaatataaacaacaccatcaatagattagttg |
5130363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 16715804 - 16715839
Alignment:
| Q |
132 |
aaactgtccattttttcctcctccatcaacacagaa |
167 |
Q |
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| T |
16715804 |
aaactgtccattttttcctcctccatcaacatagaa |
16715839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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