View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_high_48 (Length: 361)
Name: NF2324_high_48
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 39195531 - 39195858
Alignment:
| Q |
20 |
tgatattttaagataatagtgagttggaaataaagaatttgtgggatgtgggaggggtgagcaatagtgtggttatttgaaggtgaatcggcgagatact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39195531 |
tgatattttaagataatagtgagttggaaataaagaatttgtgggatgtgggaggggtgagcaatagtgtggttatttgaaggtgaatcggcgagatact |
39195630 |
T |
|
| Q |
120 |
caatgtataaacagcataatttcatgccacaactccacatccacaatacacatcacaacaatcacaatgttcacaattgcagtcgcagtggctgcaacca |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39195631 |
caatgtataaacagcataagttcatgccacaactccacatccacaatacacatcacaacaatcacaatgttcacaattgcagtcgcagtggctgcaacca |
39195730 |
T |
|
| Q |
220 |
cagtcacatctgtaattgcagcttctatttgaaacaaaaggcctagcttatttaggcaaattaaataggcttaaactaggttagaaaagtcgtaattcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39195731 |
cagtcacatctgtaattgcagcttctatttgaaacaaaaggcctagcttatttaggcaaattaaataggcttaaactaggttagaaaagtcttaattcaa |
39195830 |
T |
|
| Q |
320 |
gtcaagtcatacagtcccaagtgattgc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39195831 |
gtcaagtcatacagtcccaagtgattgc |
39195858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 39217337 - 39217470
Alignment:
| Q |
204 |
gcagtggctgcaaccacagtcacatctgtaattgcagcttctatttgaaacaaaaggcctagcttatttaggcaaattaaataggcttaaactaggttag |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
39217337 |
gcagtggctgcaaccgcagtcacatctgtaattgcagcttctgtttgaaacaaaa-gcttagcttatttag------caaataggcttaagctatgttag |
39217429 |
T |
|
| Q |
304 |
aaaagtcgtaattcaagtcaagtcatacagtcccaagtgat |
344 |
Q |
| |
|
|||| || ||||||||||||| | |||||| ||||||||| |
|
|
| T |
39217430 |
aaaattcctaattcaagtcaattgatacagctccaagtgat |
39217470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 39217087 - 39217175
Alignment:
| Q |
20 |
tgatattttaagataatagtgagttggaaataaagaatttgtgggatgtgggaggggtgagcaatagtgtggttatttgaaggtgaatc |
108 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||| | ||||||||||||| |
|
|
| T |
39217087 |
tgatattttaggataatagtgagttgctgataaagaattggtgggatgtgggacgggtgagaaaaagtgtggcaacttgaaggtgaatc |
39217175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University