View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_49 (Length: 359)
Name: NF2324_high_49
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_49 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 39195440 - 39195082
Alignment:
| Q |
1 |
ataaccggtgaccatgataaacataccccaatatgttgtgatgcaatttagcacactgtgtaacctctataaaagtatgaaggcattgtgacttttaaag |
100 |
Q |
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| T |
39195440 |
ataacctgttaccatgataaacataccccaatatgttgtgatgcaatttggcacactgtgtaaccactataaaagtatgaatgcattgtgatttttaaag |
39195341 |
T |
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| Q |
101 |
acaagatctacaagattataatcttaaaagctagtcatggacttccaaaatgtttacccnnnnnnngataaacaggtcataatcaagccttaaacttggg |
200 |
Q |
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| T |
39195340 |
acaaggactacaagattataatcttaaaagctagtcatggacttccaaaatgtttacccaaaaaaagataaacaggtcatactcaagccttaaacttggg |
39195241 |
T |
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| Q |
201 |
aaatagattggtctcatcaaaggaaaggttttacaaagatgtgcatcccaacattagaaagtttcccctatgacgaaatttgcatgatggaccaaaacaa |
300 |
Q |
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| T |
39195240 |
aaatagattggtctcatcaaaggaaaggttttacaaagatgtgcatcccaacattagaaagtttcccctatgacgaaatttgcatgatggaccaaaacaa |
39195141 |
T |
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| Q |
301 |
catacttgacaatttatcctgacccaaaatctttcaactatttattctagtacaatgtt |
359 |
Q |
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| T |
39195140 |
catacttgacaatttttcctgacccaaaatctttcaactatttattctagtacaatgtt |
39195082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 259
Target Start/End: Complemental strand, 39224711 - 39224514
Alignment:
| Q |
62 |
aacctctataaaagtatgaaggcattgtgacttttaaagacaagatctacaagattataatcttaaaagctagtcatggacttccaaaatgtttacccnn |
161 |
Q |
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| T |
39224711 |
aaccactataaaagtgtgattgcattgtgatttttaaagacagtgactacaagattataatcttaaaagctagtcatggacttccaaaatgtttacccct |
39224612 |
T |
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| Q |
162 |
nnnnngataaacaggtcataatcaagccttaaacttgggaaatagattggtctcatcaaaggaaaggttttacaaagatgtgcatcccaacattagaa |
259 |
Q |
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| T |
39224611 |
aaaaagataaataggtcatactcaagtcttaaacttaagaaacagataggtctcgtcaaacgaaaagttttacctagatgtgcatcccaagattagaa |
39224514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 39216965 - 39216794
Alignment:
| Q |
31 |
atatgttgtgatgcaatttagcacactg-tgtaacctctataaaagtatgaaggcattgtgacttttaaagacaagatctacaagattataatcttaaaa |
129 |
Q |
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| T |
39216965 |
atatggtgtgatgcaatttggcacactactgcaacaactataaaactgtgactgcattgtgatttttaatgaaaaggactctaagattattatcttaaaa |
39216866 |
T |
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| Q |
130 |
gctagtcatggacttccaaaatgtttacccnnnnnnngataaacaggtcataatcaagccttaaacttgggaa |
202 |
Q |
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| T |
39216865 |
gcaagtaatggacttcc-aaatgtttacccctaaaaagataaataggtcatactcaaaccttaaacttgggaa |
39216794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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