View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_high_5 (Length: 775)

Name: NF2324_high_5
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_high_5
NF2324_high_5
[»] chr4 (3 HSPs)
chr4 (465-763)||(30364139-30364429)
chr4 (23-266)||(30363694-30363937)
chr4 (348-412)||(30364014-30364078)
[»] chr2 (4 HSPs)
chr2 (23-183)||(15228889-15229049)
chr2 (481-531)||(7863401-7863451)
chr2 (496-535)||(39719060-39719099)
chr2 (496-535)||(39719185-39719224)
[»] chr5 (5 HSPs)
chr5 (575-760)||(24467499-24467686)
chr5 (178-280)||(24466566-24466668)
chr5 (465-554)||(24467365-24467454)
chr5 (178-280)||(24465238-24465340)
chr5 (481-535)||(29075641-29075695)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 465 - 763
Target Start/End: Original strand, 30364139 - 30364429
Alignment:
Q  465 gaggttgtcacaaggctatttgtaaggtttagtgaatagagtagtgacactattgtgaaggggaaacccttcagaaattctatcctattttcttcataat 564  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30364139 gaggttgtcacaaggctatttgtaag--------aatagagtagtgacactattgtgaaggggaaacccttcagaaattctatcctattttcttcataat 30364230  T
Q  565 caaagattgtgttcctaacataattgaaacacaatttcctatagtatgaatcatatagagttcctttagtacaaaattatgaatcatagaattgaaatcc 664  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30364231 caaagattgggtacctaacataattgaaacacaatttcctatagtatgaatcatatagagttcctttagtacaaaattatgaatcatagaattgaaatcc 30364330  T
Q  665 caatcaccagtcaaaatcaaaatctcacccaccctaagcaacaaaaaatctgaaaaccattgaaaactacagaataaacctaactagcgaatgaaagaa 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30364331 caatcaccagtcaaaatcaaaatctcacccaccctaagcaacaaaaaatctgaaaaccattgaaagctacagaataaacctaactagcgaatgaaagaa 30364429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 30363694 - 30363937
Alignment:
Q  23 aggaacaattgtaagcttttcttccttggctctgtcatcttcctttactttgctagtaatgctctgtggccgagtatttgattcaagaacactgtcttca 122  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30363694 aggaacaattgtaaccttttcttccttggctctatcatcttcctttactttgctagtaatgctctgtggccgagtatttgattcaagaacactgtcttca 30363793  T
Q  123 acctttggcatattgtcagcttcactaaaatcacataaggtatctacagtaatggatctaccagccttgattttaggcatgaatgctgcaacaaaataaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30363794 acctttggcatattgtcagcttcactaaaatcacataaggtatctacagtaatggatctaccagccttgattttaggcatgaatgctgcaacaaaataaa 30363893  T
Q  223 aatccaaccaagtcaaccctttatacaccatagaaacaattaaa 266  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  30363894 aatccaaccaagtcaaccctttatacaccatagaaacaactaaa 30363937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 30364014 - 30364078
Alignment:
Q  348 aattcatttcatctatgtattctaagtgctagtgcaacataattaggatatagaataatgactaa 412  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  30364014 aattcatttcatctatgtattctgagtgctggtgcaacataattaggatatagaataatgactaa 30364078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 15228889 - 15229049
Alignment:
Q  23 aggaacaattgtaagcttttcttccttggctctgtcatcttcctttactttgctagtaatgctctgtggccgagtatttgattcaagaacactgtcttca 122  Q
    ||||||||||||||||||||||||||| ||| | | |||||| |||||||||||| |||||||||||||  ||||||||||||| |||||| ||||||||    
T  15228889 aggaacaattgtaagcttttcttccttagctttataatcttcatttactttgctaataatgctctgtggttgagtatttgattccagaacattgtcttca 15228988  T
Q  123 acctttggcatattgtcagcttcactaaaatcacataaggtatctacagtaatggatctac 183  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  15228989 atctttggcatattgtcagcttcactaaaatcacataaggtgtctacaataatggatctac 15229049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 7863401 - 7863451
Alignment:
Q  481 tatttgtaaggtttagtgaatagagtagtgacactattgtgaaggggaaac 531  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||| ||||    
T  7863401 tatttgtaaagtttagtgaatagagtagcgactctattgtgaagggaaaac 7863451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 535
Target Start/End: Original strand, 39719060 - 39719099
Alignment:
Q  496 gtgaatagagtagtgacactattgtgaaggggaaaccctt 535  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  39719060 gtgaatagagtaatgactctattgtgaaggggaaaccctt 39719099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 535
Target Start/End: Original strand, 39719185 - 39719224
Alignment:
Q  496 gtgaatagagtagtgacactattgtgaaggggaaaccctt 535  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  39719185 gtgaatagagtaatgactctattgtgaaggggaaaccctt 39719224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 575 - 760
Target Start/End: Original strand, 24467499 - 24467686
Alignment:
Q  575 gttcctaacataattgaaacacaatttcctatagtat---gaatcatatagagttcctttagtacaaaattatgaatcatagaattgaaatcccaatcac 671  Q
    |||||||||||||||||||||||||| ||| ||||||   |||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||    
T  24467499 gttcctaacataattgaaacacaatt-cctttagtattatgaatcatatagagttcctttagtacaaaattaagattaatagaattg-aatcccaatcac 24467596  T
Q  672 c-agtcaaaatcaaaatctcacccaccctaagcaacaaaaaatctg-aaaaccattgaaaactacagaataaacctaactagcgaatgaaa 760  Q
    | |||| |||||||||  |  ||||||||||||||||||||||||| |||| |||||||| ||||| |||||||| || || |||||||||    
T  24467597 caagtc-aaatcaaaagtttgcccaccctaagcaacaaaaaatctgaaaaatcattgaaatctacataataaacccaaataacgaatgaaa 24467686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 24466566 - 24466668
Alignment:
Q  178 atctaccagccttgattttaggcatgaatgctgcaacaaaataaaaatccaaccaagtcaaccctttatacaccatagaaacaattaaaacgaggtctaa 277  Q
    |||||||| ||||||||||||||||||||||||||| ||| | || |||||||||||| |||||||| |||| |||||||||||||||||| | ||||||    
T  24466566 atctaccaaccttgattttaggcatgaatgctgcaaaaaatttaacatccaaccaagtaaaccctttgtacatcatagaaacaattaaaacaatgtctaa 24466665  T
Q  278 agc 280  Q
    |||    
T  24466666 agc 24466668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 465 - 554
Target Start/End: Original strand, 24467365 - 24467454
Alignment:
Q  465 gaggttgtcacaaggctatttgtaaggtttagtgaatagagtagtgacactattgtgaaggggaaacccttcagaaattctatcctattt 554  Q
    |||||||| |||||||||||||||||||| ||||||| || |||| || |||||||||||||||||| ||| ||||||||||||||||||    
T  24467365 gaggttgttacaaggctatttgtaaggttcagtgaattgaatagttactctattgtgaaggggaaacgctttagaaattctatcctattt 24467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 24465340 - 24465238
Alignment:
Q  178 atctaccagccttgattttaggcatgaatgctgcaacaaaataaaaatccaaccaagtcaaccctttatacaccatagaaacaattaaaacgaggtctaa 277  Q
    |||||||| ||||||||||||||||||||| ||||| ||| | || |||| ||||||| |||||||| |||| |||||||||||||||||| | ||||||    
T  24465340 atctaccaaccttgattttaggcatgaatgttgcaaaaaatttaacatccgaccaagtaaaccctttgtacatcatagaaacaattaaaacaatgtctaa 24465241  T
Q  278 agc 280  Q
    |||    
T  24465240 agc 24465238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 29075641 - 29075695
Alignment:
Q  481 tatttgtaaggtttagtgaatagagtagtgacactattgtgaaggggaaaccctt 535  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||    
T  29075641 tatttgtaaagtttagtgaatagagtagtgactatattgtgaaggggaaaacctt 29075695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University