View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_50 (Length: 355)
Name: NF2324_high_50
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_50 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 36886953 - 36887291
Alignment:
| Q |
17 |
tgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaaccaa |
116 |
Q |
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| T |
36886953 |
tgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaaccaa |
36887052 |
T |
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| Q |
117 |
aaatatggaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacagc |
216 |
Q |
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| T |
36887053 |
aaatatggaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacagc |
36887152 |
T |
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| Q |
217 |
tgtttcaaatttcggagattataaagcctgcatagactcccagtgaggactaacccttgaatgtttctgcattttgacatagaacacggataccaattat |
316 |
Q |
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| T |
36887153 |
tgtttcaaatttcggagattataaagcctgcatagactcccagtgaggtctaacccttgaatgtttctgcattttgacatagaacacggataccaattat |
36887252 |
T |
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| Q |
317 |
caatatcattctgatcttagggtctaactgaattgactt |
355 |
Q |
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| T |
36887253 |
caatatcattctgatcttagggtctaactgaattgactt |
36887291 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 22557140 - 22557219
Alignment:
| Q |
23 |
gaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatc |
102 |
Q |
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||||||| | |||||||||||||| ||||||||||||| ||| | || ||||| |||| |||| | || ||||||||||| |
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| T |
22557140 |
gaacagtaggcttacatatgtgtggcattggggggtaatccatatggaatttcacccattatgctgttggaactgacatc |
22557219 |
T |
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