View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_63 (Length: 304)
Name: NF2324_high_63
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 6132697 - 6132965
Alignment:
| Q |
20 |
acgcgtggatatttgtatgcttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctga |
119 |
Q |
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| T |
6132697 |
acgcgtggatatttgtatgcttgaatgttaaatttaaaggttttcaatcgagggcaacttcggccaatggcttcaaaagaatgatgagttaggttgctga |
6132796 |
T |
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| Q |
120 |
gtgatatatcaagttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtag |
219 |
Q |
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| T |
6132797 |
gtgatatatcaagttcctctaattgaggaagctattcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtaa |
6132896 |
T |
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| Q |
220 |
atgtcttgcaccgtaaaatgtcaagacagcaagatgagatactgttacatagatatgctaccaaaatcc |
288 |
Q |
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| T |
6132897 |
atgtcttgcactgtaaaatgtcaagatagcaagatgagatactgttacatagatatgccaccaaaatcc |
6132965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 6053501 - 6053255
Alignment:
| Q |
39 |
cttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctgagtgatatatcaagttcctc |
138 |
Q |
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| T |
6053501 |
cttgactgttgaatttcaatgttttcaatcgagggcaacgtcggccaattggttcgaaaagacgatcggataagttgctgattgatatatcaagttcctc |
6053402 |
T |
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| Q |
139 |
taattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatgtcttgcaccgtaaaat |
238 |
Q |
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| T |
6053401 |
taagcaaggaaacttttcagcagcatcacacaatccttcatctgatatgctccagcaagatgcaagacgaaggcgttgtagatgacttgcgctgaaaaat |
6053302 |
T |
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| Q |
239 |
gtcaagacagcaagatgagatactgttacatagatatgctaccaaaa |
285 |
Q |
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| T |
6053301 |
gccaagacaacaagttgagatactgttacacagagatgctatcaaaa |
6053255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 6043431 - 6043227
Alignment:
| Q |
33 |
tgtatgcttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctgagtgatatatcaag |
132 |
Q |
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| T |
6043431 |
tgtatccttcaatgttgaatttaaaggttttcaattgagggcaacctcggccaatggcttccaaaggttcattggacaagctgctgattgttatatcaag |
6043332 |
T |
|
| Q |
133 |
ttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatgtcttgcaccg |
232 |
Q |
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| T |
6043331 |
ttcctccagctgaggaagcttttcagcaacttcacacaatccttcatctgttacgccatagcaacataaaagacgaaggcgtcgtacttgacttgcactg |
6043232 |
T |
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| Q |
233 |
taaaa |
237 |
Q |
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||||| |
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| T |
6043231 |
taaaa |
6043227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 6037895 - 6037765
Alignment:
| Q |
123 |
atatatcaagttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatg |
222 |
Q |
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||||||||||||||||||| |||| || |||||| || ||||||| ||| ||| ||| ||||| |||||||||| |||||| |||||||| ||||||| |
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| T |
6037895 |
atatatcaagttcctctaagtgagaaaatttttcagcaacttcacacaatacttcatctgttaccctatagcaacatgcaagatgaaggcgtcgtagatg |
6037796 |
T |
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| Q |
223 |
tcttgcaccgtaaaatgtcaagacagcaaga |
253 |
Q |
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| T |
6037795 |
acttgcactgtaaaatggcaaaacaacaaga |
6037765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 247
Target Start/End: Complemental strand, 6046722 - 6046518
Alignment:
| Q |
43 |
aatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctgagtgatatatcaagttcctctaat |
142 |
Q |
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| T |
6046722 |
aatgttgaatttgaaggttttcaactgaggacaacatcggccaatagcttctagaggatcattggataagctgtggattgtaatatcaagttcctccaag |
6046623 |
T |
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| Q |
143 |
tgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatgtcttgcaccgtaaaatgtca |
242 |
Q |
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| T |
6046622 |
tgagaaagctttccagcaacttcacacaatccttcatctgtcacattgtagcaacctaaaagacggaggcgttgaagatgatttgcactgtaaaatgtca |
6046523 |
T |
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| Q |
243 |
agaca |
247 |
Q |
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||||| |
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| T |
6046522 |
agaca |
6046518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 6037970 - 6037931
Alignment:
| Q |
48 |
tgaatttaaaggttttcaatcgagggcaacatcggccaat |
87 |
Q |
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| T |
6037970 |
tgaattcaagggttttcaatcgagggcaacatcggccaat |
6037931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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