View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_77 (Length: 254)
Name: NF2324_high_77
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_77 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 1248838 - 1249060
Alignment:
| Q |
13 |
caagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgaccta |
112 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1248838 |
caagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgaccta |
1248937 |
T |
|
| Q |
113 |
ccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctcctta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248938 |
ccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctcctta |
1249037 |
T |
|
| Q |
213 |
actggaacagcctaaccggtcct |
235 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1249038 |
actggaacagcctaaccggtcct |
1249060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 12079788 - 12079566
Alignment:
| Q |
13 |
caagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgaccta |
112 |
Q |
| |
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|||||| ||||||||||| || ||| | |||||||||||||| ||||| || ||||||||||| || |||||||| ||||| |||||||| || || ||| |
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| T |
12079788 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatcta |
12079689 |
T |
|
| Q |
113 |
ccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctcctta |
212 |
Q |
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| T |
12079688 |
ccttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctcctta |
12079589 |
T |
|
| Q |
213 |
actggaacagcctaaccggtcct |
235 |
Q |
| |
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| ||||||| |||||| |||||| |
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| T |
12079588 |
attggaacaacctaactggtcct |
12079566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 12096428 - 12096206
Alignment:
| Q |
13 |
caagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgaccta |
112 |
Q |
| |
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|||||| ||||||||||| || ||| | |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || ||| |
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| T |
12096428 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatcta |
12096329 |
T |
|
| Q |
113 |
ccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctcctta |
212 |
Q |
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|| ||||| ||||||||||| || ||| |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||| |
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| T |
12096328 |
ccttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctcctta |
12096229 |
T |
|
| Q |
213 |
actggaacagcctaaccggtcct |
235 |
Q |
| |
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| ||||||| |||||| |||||| |
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| T |
12096228 |
attggaacaacctaactggtcct |
12096206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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