View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_high_78 (Length: 254)
Name: NF2324_high_78
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_78 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 25542514 - 25542290
Alignment:
| Q |
13 |
aatatccctatggttgtggataacaaagatatttttaaattctatgttagaattagaaataaattataccaacttgaagctgaaagtaaagaagacaagt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25542514 |
aatacccctatggttgtggataacaaagatatttttaaattctatgttagaattagaaataaattataccaacttgaagctgaaagtaaagaagacaagt |
25542415 |
T |
|
| Q |
113 |
acactagaatatttacaattaaattattgtccaaaatggatttacaagtacaacgaaagggcaatataacaacccttacctaaaaaatggatcatatgac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25542414 |
acactagaatatttacaattaaattattgtccaaaatggatttacaagtacaatgaaagggcaatataacaacccttacctaaaaaatggatcatatgac |
25542315 |
T |
|
| Q |
213 |
acatgtcttgggtctggaataataa |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
25542314 |
acatgtcttgggtctggaataataa |
25542290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University