View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_81 (Length: 249)
Name: NF2324_high_81
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_81 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 34319940 - 34320175
Alignment:
| Q |
17 |
tgtactagtgagaatattaatcagttgtagagccaatcaaataccat--ggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcc |
114 |
Q |
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| T |
34319940 |
tgtactagtgagaatattaatcagttgttgagccaatcaaataccatatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcc |
34320039 |
T |
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| Q |
115 |
tactcacctcagaatttttccactttctttcattgataaca-nnnnnnncgtttatatgttccagtcattttcttttacaatccaaatgagggtagtgac |
213 |
Q |
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| T |
34320040 |
tactcacctcagaatttatccactttctttcattgataacattttttttcgtttatatgttccagtcattttcttttacaatccaaatgagtgtagtgac |
34320139 |
T |
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| Q |
214 |
caaaattccaatgtatcactacttcgaaaatcttta |
249 |
Q |
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| T |
34320140 |
caaaattccaaagtatcactacttcgaaaatcttta |
34320175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 34328891 - 34328980
Alignment:
| Q |
58 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcat |
147 |
Q |
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| T |
34328891 |
taccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctttcat |
34328980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 36622830 - 36622741
Alignment:
| Q |
58 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcat |
147 |
Q |
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| T |
36622830 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttctttcat |
36622741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 36634222 - 36634117
Alignment:
| Q |
36 |
atcagttgtagagccaatcaaataccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttcc |
135 |
Q |
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| T |
36634222 |
atcagttggagaggcaattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttcc |
36634126 |
T |
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| Q |
136 |
actttcttt |
144 |
Q |
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| T |
36634125 |
actttcttt |
36634117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 36628067 - 36627978
Alignment:
| Q |
58 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcat |
147 |
Q |
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| T |
36628067 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcat |
36627978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 45307192 - 45307109
Alignment:
| Q |
62 |
atggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttc |
145 |
Q |
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| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcctcatcaccttagaatatatccactttctttc |
45307109 |
T |
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