View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_85 (Length: 244)
Name: NF2324_high_85
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_85 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 30113181 - 30113046
Alignment:
| Q |
1 |
tttaacattatatacttaattacaatgagttctacttccctttttaagaacttgagcatcttgagcaagctttggtgtagatttattgagacataagacc |
100 |
Q |
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| T |
30113181 |
tttaacattatatacttaattacaatgagttccacttccctttttaagaacttgagca---------agctttggtgtagatttattgagacataagacc |
30113091 |
T |
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| Q |
101 |
tagagtagactggttaaatccatctaaccaaattggatttgtgat |
145 |
Q |
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| T |
30113090 |
tagagtagactggttaaatccatctaaccaaattggatttgtgat |
30113046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 7607550 - 7607491
Alignment:
| Q |
3 |
taacattatatacttaattacaatgagttctacttccctttttaagaacttgagcatctt |
62 |
Q |
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| T |
7607550 |
taacatgatatacttaattacaatgagttttacttctctatttaagaacttgggcatctt |
7607491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 14185345 - 14185404
Alignment:
| Q |
3 |
taacattatatacttaattacaatgagttctacttccctttttaagaacttgagcatctt |
62 |
Q |
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| T |
14185345 |
taacatgatatacttaattacaatgagttttacttctctatttaagaacttgggcatctt |
14185404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 31770110 - 31770051
Alignment:
| Q |
3 |
taacattatatacttaattacaatgagttctacttccctttttaagaacttgagcatctt |
62 |
Q |
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| T |
31770110 |
taacatgatatacttaattacaatgagttttacttctctatttaagaacttgggcatctt |
31770051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 51385663 - 51385599
Alignment:
| Q |
111 |
tggttaaatccatctaaccaaattggatttgtgataagtcgcagcccatagtaatgtgttatttg |
175 |
Q |
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||||||||| ||||| |||||||||||||| |||| ||| |||| ||| |||||||||| |||| |
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| T |
51385663 |
tggttaaattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttg |
51385599 |
T |
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