View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_high_9 (Length: 628)
Name: NF2324_high_9
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_high_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Complemental strand, 4749747 - 4749131
Alignment:
| Q |
14 |
acctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagg |
113 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749747 |
acctgagaaagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagg |
4749648 |
T |
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| Q |
114 |
gttcatagttttgtttgttnnnnnnnnnnnncagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtg |
213 |
Q |
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| T |
4749647 |
gttcatagttttgtttgttaaaaaaaaaaa-cagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtg |
4749549 |
T |
|
| Q |
214 |
gatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749548 |
gatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatc |
4749449 |
T |
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| Q |
314 |
ttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttcattattattgtttctcctcttatga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4749448 |
ttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatctttttttgtctgttgtttttcattattattgtttctcctcttatga |
4749349 |
T |
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| Q |
414 |
tccaccaagcctttcaacagcttcaccaacttctttcgtgcctaaacacaataggannnnnnnaaatgtaactataaggtgtgaatcaaattgtgtactt |
513 |
Q |
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| T |
4749348 |
tccaccaaacctttcaacagcttcaccaacttctttcgtgcctaaacacaataggatttttttaaatgtaactataaggtgtaaatcaaattgtgtactt |
4749249 |
T |
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| Q |
514 |
agatgaataaatgagtatataat---ttaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
610 |
Q |
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| T |
4749248 |
agatgaataaatgagtatataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
4749149 |
T |
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| Q |
611 |
atgtacaaatgctcaacc |
628 |
Q |
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| T |
4749148 |
atgtacaaatgctcaacc |
4749131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 189 - 463
Target Start/End: Complemental strand, 4758054 - 4757783
Alignment:
| Q |
189 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
288 |
Q |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
|
| Q |
289 |
gaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttc |
388 |
Q |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaacatcctaccctcttcatctttgacttccatcaataaatccatcatatcttttttcatc---ttttttac |
4757858 |
T |
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| Q |
389 |
attattattgtttctcctcttatgatccaccaagcctttcaacagcttcaccaacttctttcgtgcctaaacaca |
463 |
Q |
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|||||||| || ||||| || |||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| |
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| T |
4757857 |
tttattattattcctccttttttgatccaccaaggcttgcaatagcttcatcaacttctttcttgcctaaacaca |
4757783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 4758293 - 4758195
Alignment:
| Q |
14 |
acctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaag |
112 |
Q |
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|||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |||| |||||||||||||||||||||||| |
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| T |
4758293 |
acctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtttccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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