View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_high_94 (Length: 234)

Name: NF2324_high_94
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_high_94
NF2324_high_94
[»] chr1 (6 HSPs)
chr1 (117-199)||(2801949-2802033)
chr1 (62-130)||(2802054-2802122)
chr1 (199-234)||(2801888-2801923)
chr1 (1-63)||(30290265-30290327)
chr1 (26-63)||(39750381-39750418)
chr1 (26-66)||(52431174-52431214)
[»] chr3 (8 HSPs)
chr3 (1-63)||(46878414-46878476)
chr3 (30-65)||(26306352-26306387)
chr3 (26-65)||(43701176-43701215)
chr3 (1-64)||(7181349-7181412)
chr3 (1-63)||(14428610-14428672)
chr3 (30-63)||(37728977-37729010)
chr3 (1-63)||(45048997-45049059)
chr3 (26-70)||(37728706-37728750)
[»] chr2 (5 HSPs)
chr2 (1-63)||(23788969-23789031)
chr2 (26-65)||(8841657-8841696)
chr2 (1-64)||(40607701-40607764)
chr2 (1-63)||(27560206-27560268)
chr2 (26-66)||(34062665-34062705)
[»] chr5 (4 HSPs)
chr5 (26-73)||(14913638-14913685)
chr5 (1-66)||(3028010-3028075)
chr5 (26-66)||(6673228-6673268)
chr5 (26-66)||(26894873-26894913)
[»] chr8 (5 HSPs)
chr8 (1-64)||(32675732-32675795)
chr8 (26-63)||(11798605-11798642)
chr8 (26-66)||(18754141-18754181)
chr8 (1-66)||(26016566-26016631)
chr8 (30-66)||(32475231-32475267)
[»] chr7 (3 HSPs)
chr7 (1-64)||(39871588-39871651)
chr7 (26-63)||(41003154-41003191)
chr7 (26-66)||(38858295-38858335)
[»] chr4 (3 HSPs)
chr4 (26-64)||(6807428-6807466)
chr4 (26-64)||(36391853-36391891)
chr4 (1-63)||(5743634-5743696)
[»] scaffold0308 (1 HSPs)
scaffold0308 (26-63)||(14348-14385)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-75)||(47628-47677)
[»] scaffold0122 (1 HSPs)
scaffold0122 (26-66)||(12062-12102)
[»] chr6 (2 HSPs)
chr6 (26-66)||(4844397-4844437)
chr6 (27-63)||(13648130-13648166)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 2802033 - 2801949
Alignment:
Q  117 aacaaatatacaattattttt--aagaaactaaaatgaaatttcttatacattataaacacgaatgaagcaaatgaaacttatga 199  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802033 aacaaatatacaattttttttttaagaaactaaaatgaaatttcttatacattataaacacgaatgaagcaaatgaaacttatga 2801949  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 2802122 - 2802054
Alignment:
Q  62 tataacttaattatatttcgttaaataacagcaattaaatttaacattatacaataacaaatatacaat 130  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802122 tataacataattatatttcgttaaataacagcaattaaatttaacattatacaataacaaatatacaat 2802054  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 2801923 - 2801888
Alignment:
Q  199 atgtatgagctcagaatgctaactaaacaacaagcc 234  Q
    ||||||||||||||||||||||||||||||||||||    
T  2801923 atgtatgagctcagaatgctaactaaacaacaagcc 2801888  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30290327 - 30290265
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| |||||||||    
T  30290327 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 30290265  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 39750381 - 39750418
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  39750381 ttctcaaaagggtcttataattagggacagagggagta 39750418  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 52431174 - 52431214
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  52431174 ttctcaaaagggtcttataattagggacggagggagtataa 52431214  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46878414 - 46878476
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| ||||||||||||||| |||||||||    
T  46878414 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaaggacggagggagta 46878476  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 26306387 - 26306352
Alignment:
Q  30 caaaagggacttataattaaggacagagggagtata 65  Q
    |||||||| |||||||||||||||||||||||||||    
T  26306387 caaaagggtcttataattaaggacagagggagtata 26306352  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 43701215 - 43701176
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtata 65  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  43701215 ttctcaaaagggtcttataattagggacagagggagtata 43701176  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7181412 - 7181349
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| ||||||||||    
T  7181412 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 7181349  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14428672 - 14428610
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| |||||||||    
T  14428672 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 14428610  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 37728977 - 37729010
Alignment:
Q  30 caaaagggacttataattaaggacagagggagta 63  Q
    |||||||| |||||||||||||||||||||||||    
T  37728977 caaaagggtcttataattaaggacagagggagta 37729010  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45048997 - 45049059
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||| |||||| || |||||||||||||||||||||||||    
T  45048997 gtcttataaaaagggacaaaattttttttcaaaaaggtcttataattaaggacagagggagta 45049059  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 37728750 - 37728706
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataactta 70  Q
    |||||||||||| |||||||||| |||| |||||||||| |||||    
T  37728750 ttctcaaaagggtcttataattagggacggagggagtattactta 37728706  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23789031 - 23788969
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| ||||||||||||||| |||||||||    
T  23789031 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaaggacggagggagta 23788969  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 8841657 - 8841696
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtata 65  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  8841657 ttctcaaaagggtcttataattaaggacggagggagtata 8841696  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40607764 - 40607701
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| ||||||||||    
T  40607764 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 40607701  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27560268 - 27560206
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| |||||||||    
T  27560268 gtcttataaaaagggacaaaaatttttctcaaaagggtcttataattagggacggagggagta 27560206  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 34062665 - 34062705
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagtataa 34062705  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 14913685 - 14913638
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataacttaatt 73  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagtataatttaatt 14913638  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3028075 - 3028010
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| |||| |||||||    
T  3028075 gtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggaggtagtataa 3028010  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 6673228 - 6673268
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagtataa 6673268  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 26894873 - 26894913
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagtataa 26894913  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32675732 - 32675795
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| ||||||||||    
T  32675732 gtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagtat 32675795  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 11798642 - 11798605
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  11798642 ttctcaaaagggtcttataattagggacagagggagta 11798605  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 18754181 - 18754141
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagtataa 18754141  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26016631 - 26016566
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||||||||       ||| ||||||||| |||||||||| |||| ||||||||||||    
T  26016631 gtcttataaaaagggacaaatttttttttcaaaagggtcttataattagggacggagggagtataa 26016566  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 32475231 - 32475267
Alignment:
Q  30 caaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||| |||||||||| |||||||||||||||||    
T  32475231 caaaagggtcttataattagggacagagggagtataa 32475267  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39871588 - 39871651
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| ||||||||||    
T  39871588 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 39871651  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 41003154 - 41003191
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  41003154 ttctcaaaagggtcttataattaaggacggagggagta 41003191  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 38858335 - 38858295
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  38858335 ttctcaaaagggtcttataattagggacggagggagtataa 38858295  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 6807466 - 6807428
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  6807466 ttctcaaaagggtcttataattagggacagagggagtat 6807428  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 36391891 - 36391853
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtat 64  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  36391891 ttctcaaaagggtcttataattaaggacggagggagtat 36391853  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5743634 - 5743696
Alignment:
Q  1 gtcttataaaaagggacnnnnnnntttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||||||||       ||||||||||||| |||||||||| |||| |||||||||    
T  5743634 gtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 5743696  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 14348 - 14385
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagta 63  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  14348 ttctcaaaagggtcttataattaaggacggagggagta 14385  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 47677 - 47628
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataacttaattat 75  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||| ||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagtataatttatttat 47628  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 12102 - 12062
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagtataa 12062  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 4844437 - 4844397
Alignment:
Q  26 ttctcaaaagggacttataattaaggacagagggagtataa 66  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagtataa 4844397  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 13648130 - 13648166
Alignment:
Q  27 tctcaaaagggacttataattaaggacagagggagta 63  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  13648130 tctcaaaagggtcttataattaaggacggagggagta 13648166  T

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