View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_104 (Length: 234)
Name: NF2324_low_104
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_104 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 35486312 - 35486518
Alignment:
| Q |
16 |
aaaacaatgacatctttatcattcaatcaatattggagattacaattttttaccattgtgtatcc-aaaatggaagtcatattaatatctatagattata |
114 |
Q |
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| T |
35486312 |
aaaacaatgacatttttatcattcaatcaatattggagattacaattttttaccattgtgtatccgaaaatggaagtcatattaatatatatagattata |
35486411 |
T |
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| Q |
115 |
atcgttctctacgcatcttcatgttttaaatgttatgcagtattgtttcataagtgcattcatatgatatgaagttacagtaaaattatttgttgtatta |
214 |
Q |
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| T |
35486412 |
atcgttctctatgtatcttcatgttttaaatgttttgtagtattgtttcataagtgcattcatatgatatgaagttacagtaaaattatttgttgcatta |
35486511 |
T |
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| Q |
215 |
gtctgtg |
221 |
Q |
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|| |||| |
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| T |
35486512 |
gtgtgtg |
35486518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 31535343 - 31535208
Alignment:
| Q |
16 |
aaaacaatgacatctttatcattcaatcaatattggagattacaattttttaccattgtgtatc--caaaatggaagtcatattaatatctatagattat |
113 |
Q |
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| T |
31535343 |
aaaacaatgacatctttattattcaatcaatattggagattaattttttttaccattgtgtatctaaaaaatggaag--acattaatatctatggattat |
31535246 |
T |
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| Q |
114 |
aatcgttctctacgcatcttcatgttttaaatgttatg |
151 |
Q |
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| T |
31535245 |
gattgttttctatatatcttcgtattttaaatgttatg |
31535208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 31534417 - 31534373
Alignment:
| Q |
162 |
tcataagtgcattcatatgatatgaagttacagtaaaattatttg |
206 |
Q |
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| T |
31534417 |
tcataagtgcattcatatgacataaagttatagtaaaattatttg |
31534373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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