View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_109 (Length: 225)
Name: NF2324_low_109
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_109 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 13881091 - 13880988
Alignment:
| Q |
19 |
ccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881091 |
ccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcct |
13880992 |
T |
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| Q |
119 |
caaa |
122 |
Q |
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|||| |
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| T |
13880991 |
caaa |
13880988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13880836 - 13880745
Alignment:
| Q |
119 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13880836 |
caaagtagatcaatggtggaggatttgtgaaaaa-tcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgc |
13880745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 13254484 - 13254381
Alignment:
| Q |
19 |
ccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcct |
118 |
Q |
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|||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
13254484 |
ccttaacaatgaaggaggtgatacataggccaccatttgaggttctcagtcagtcttcaaatctgatgaaaatgttacattataattttcatcttatcct |
13254385 |
T |
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| Q |
119 |
caaa |
122 |
Q |
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|||| |
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| T |
13254384 |
caaa |
13254381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 13254277 - 13254239
Alignment:
| Q |
149 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13254277 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
13254239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 14367347 - 14367395
Alignment:
| Q |
19 |
ccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcag |
67 |
Q |
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||||||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
14367347 |
ccttaacagtgaaggaggtgatgcataagccaccatttgaggttctcag |
14367395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 13878144 - 13878079
Alignment:
| Q |
119 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgca |
185 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||| |||||| |
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| T |
13878144 |
caaagtagatcaatggtggaggatatgtg-ggaaatcaattcaatggtgatgaaattggtggctgca |
13878079 |
T |
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