View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_112 (Length: 223)
Name: NF2324_low_112
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 39026849 - 39027003
Alignment:
| Q |
19 |
atactgatccatctatatctggagtaataaatagtaatagtaaggacttggagggaaatcagaatattacatctacatctgatactgcaaatgatgaagg |
118 |
Q |
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| T |
39026849 |
atactgatccatctatatctggagtaataaatggtaatggtaaggacttggagggaaatcagaattctacatctacatctgatactgcaaatgatgaagg |
39026948 |
T |
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| Q |
119 |
ttttgctcatttgaatgcaggaaacaagaaaaacctagaaaaggtattattgcat |
173 |
Q |
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| T |
39026949 |
ttctgctcatttgaatgcagtaaacaagaaaaatctagaaaaggtattattgcat |
39027003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 39031589 - 39031669
Alignment:
| Q |
87 |
acatctacatctgatactgcaaatgatgaaggttttgctcatttgaatgcaggaaacaagaaaaacctagaaaaggtatta |
167 |
Q |
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| T |
39031589 |
acatctacatctaatactgaaaatgacgaaaattctgctcatttcaatgcagtaaacaagaaaaatctagaaaaggtatta |
39031669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 18184998 - 18185033
Alignment:
| Q |
172 |
atgctattctcttatagcattttcattctgtttttg |
207 |
Q |
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| T |
18184998 |
atgctattttcttatagcattttcattctgtttttg |
18185033 |
T |
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