View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_117 (Length: 212)
Name: NF2324_low_117
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_117 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 4842395 - 4842538
Alignment:
| Q |
18 |
tatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
117 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
118 |
ggaaaccactttgatttttcagtttgaatgtgtgctccaatact |
161 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatact |
4842538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 5214021 - 5213857
Alignment:
| Q |
16 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
116 |
taggaaaccactttgatttttcagtttgaatgtgtgctccaatactttgtgatgagatatataga |
180 |
Q |
| |
|
| || |||||||||| |||||||||| ||||| ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgctttgtgatgaaatatataga |
5213857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 5173130 - 5172992
Alignment:
| Q |
18 |
tatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
117 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
118 |
ggaaaccactttgatttttcagtttgaatgtgtgctcca |
156 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactcca |
5172992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 5160213 - 5160038
Alignment:
| Q |
19 |
atcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
118 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
119 |
gaaaccactttgatttttcagtttgaatgtgtgctccaata---ctttgtgatgagatatatagaacttgaagatt |
191 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| | |||||||| ||| |||||| ||||||||||| | |||||| |
|
|
| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagatt |
5160038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 5182464 - 5182330
Alignment:
| Q |
13 |
aagaatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5182464 |
aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
5182365 |
T |
|
| Q |
113 |
atttaggaaaccactttgatttttcagtttgaatg |
147 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||| |
|
|
| T |
5182364 |
atttgggaaaccactttgtcttttcagtttcaatg |
5182330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 5195853 - 5195680
Alignment:
| Q |
21 |
caaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
121 |
aaccactttgatttttcagtttgaatgtgtgctccaata---ctttgtgatgagatatatagaacttgaagatt |
191 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | |||||||| ||| |||||| ||||||||||| | |||||| |
|
|
| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagatt |
5195680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 4856867 - 4857001
Alignment:
| Q |
13 |
aagaatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
112 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4856867 |
aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
4856966 |
T |
|
| Q |
113 |
atttaggaaaccactttgatttttcagtttgaatg |
147 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||| |
|
|
| T |
4856967 |
atttgggaaaccactttgtcttttcagtttcaatg |
4857001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 7142390 - 7142256
Alignment:
| Q |
21 |
caaactatattgatatgaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
120 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||| ||||||| | ||||||| ||||||||||| ||| || |||| | | ||||||| ||||| |
|
|
| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctagga |
7142292 |
T |
|
| Q |
121 |
aaccactttgatttttcagtttgaatgtgtgctcca |
156 |
Q |
| |
|
|||||||||| |||||||||| || |||| ||||| |
|
|
| T |
7142291 |
aaccactttgtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University