View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_118 (Length: 211)

Name: NF2324_low_118
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_118
NF2324_low_118
[»] scaffold0112 (3 HSPs)
scaffold0112 (31-199)||(17713-17894)
scaffold0112 (24-114)||(26567-26657)
scaffold0112 (134-174)||(26481-26521)
[»] scaffold0093 (2 HSPs)
scaffold0093 (52-199)||(20501-20658)
scaffold0093 (24-76)||(20445-20497)
[»] chr5 (9 HSPs)
chr5 (52-199)||(26756465-26756622)
chr5 (52-199)||(26834162-26834319)
chr5 (52-199)||(26778225-26778383)
chr5 (26-114)||(26728891-26728979)
chr5 (71-114)||(26791581-26791624)
chr5 (24-70)||(26834110-26834156)
chr5 (24-64)||(26791502-26791542)
chr5 (134-174)||(26791670-26791710)
chr5 (136-174)||(26729027-26729065)
[»] scaffold0233 (1 HSPs)
scaffold0233 (24-174)||(17154-17314)
[»] scaffold0759 (3 HSPs)
scaffold0759 (52-111)||(1670-1731)
scaffold0759 (24-72)||(1614-1662)
scaffold0759 (134-170)||(1779-1815)
[»] scaffold0416 (3 HSPs)
scaffold0416 (52-111)||(8079-8140)
scaffold0416 (134-170)||(7995-8031)
scaffold0416 (24-72)||(8148-8196)


Alignment Details
Target: scaffold0112 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 17894 - 17713
Alignment:
Q  31 aaaataatggcattattcacaagccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactat------------ 118  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||                
T  17894 aaaataatgtcattattcacaagccttgccttttcagttataagacgaaaacacaccgaaaagagattatataaacattgtcaactattgttgtaccgga 17795  T
Q  119 -tgaatatttatttattttttggtgaaagggaatgaagcaattttaatttcatgagggagctatagtatcagttggtatatg 199  Q
     ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  17794 gtgaatatttatttattttttaatgaaagggaatgaaacaattttaatttcatgagggagctatagtgtcagttggtatatg 17713  T

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Target: scaffold0112; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 26657 - 26567
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26657 aaaggtaaaaataatgtcattattcacaagccttgccttttaagttataagaggaaaacacgccgaaaagagattatataaacattgtcaa 26567  T

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Target: scaffold0112; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 26521 - 26481
Alignment:
Q  134 tttttggtgaaagggaatgaagcaattttaatttcatgagg 174  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  26521 tttttgatgaaagggaatgaaacaattttaatttcatgagg 26481  T

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Target: scaffold0093 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 20501 - 20658
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactattg----------aatatttatttattttttggt 141  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||          ||||||||||||||||||| |    
T  20501 agccttgccttttcagttataagacgaaaacacgccgaagagagattatataaacattgtcacctattgtaccagagtgaatatttatttattttttgat 20600  T
Q  142 gaaagggaatgaagcaattttaatttcatgagggagctatagtatcagttggtatatg 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  20601 gaaagggaatgaaacaattttaatttcatgagggagctatagtgtcagttggtatatg 20658  T

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Target: scaffold0093; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 20445 - 20497
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagttataagac 76  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  20445 aaaggtaaaaataatatcattattcacaagccttgccttttcagttataagac 20497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 26756465 - 26756622
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactat----------tgaatatttatttattttttggt 141  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| |    
T  26756465 agccttgccttttcagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactattgtaccggagtgaatatttatttattttttgat 26756564  T
Q  142 gaaagggaatgaagcaattttaatttcatgagggagctatagtatcagttggtatatg 199  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||    
T  26756565 gaaagggaatgaaacaattttaatttcatgaggtagctatagtgtcagttagtatatg 26756622  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 26834162 - 26834319
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactattg----------aatatttatttattttttggt 141  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||          ||||||||||||||||||| |    
T  26834162 agccttgccttttcagttataagacgaaaacacgccgaaaagaaattatataaacattgtcaactattgtacgggagtgaatatttatttattttttgat 26834261  T
Q  142 gaaagggaatgaagcaattttaatttcatgagggagctatagtatcagttggtatatg 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  26834262 gaaagggaatgaaacaattttaatttcatgagggagctatagtgtcagttgttatatg 26834319  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 26778383 - 26778225
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaa-cattgtcaactattg----------aatatttatttattttttgg 140  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||          |||||||||||||||||||     
T  26778383 agccttgtcttttcagttataagacgaaaacacgccgaaaagagattttataaaacattgtcaactattgtaccagagtgaatatttatttattttttga 26778284  T
Q  141 tgaaagggaatgaagcaattttaatttcatgagggagctatagtatcagttggtatatg 199  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||    
T  26778283 tgaaagggaatgaaacaattttaatttcatgaggtagctatagtgtcagttagtatatg 26778225  T

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Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 26728891 - 26728979
Alignment:
Q  26 aggtaaaaataatggcattattcacaagccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaa 114  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728891 aggtaaaaataatgtcattattcacaagccttgccttttcagttataagacgaaaacacgccgaaaagagattatataaacattgtcaa 26728979  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 26791581 - 26791624
Alignment:
Q  71 taagacgaaaacacgccgaaaagagattatataaacattgtcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26791581 taagacgaaaacacgccgaaaagagattatataaacattgtcaa 26791624  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 26834110 - 26834156
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagtta 70  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||    
T  26834110 aaaggtaaaaataatgtcattattcacaagccttgctttttcagtta 26834156  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 26791502 - 26791542
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgcctttt 64  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  26791502 aaaggtaaaagtaatgtcattattcacaagccttgcctttt 26791542  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 26791670 - 26791710
Alignment:
Q  134 tttttggtgaaagggaatgaagcaattttaatttcatgagg 174  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  26791670 tttttgatgaaagggaatgaaacaattttaatttcatgagg 26791710  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 26729027 - 26729065
Alignment:
Q  136 tttggtgaaagggaatgaagcaattttaatttcatgagg 174  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  26729027 tttgatgaaagggaatgaaacaattttaatttcatgagg 26729065  T

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Target: scaffold0233 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 17154 - 17314
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactat----- 118  Q
    ||||||||||||||||  ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  17154 aaaggtaaaaataatgttattattcacgagccttgccttttcagttataagacgaaaacacgccgaaaagagattatataaacattgtcaactattgtac 17253  T
Q  119 -----tgaatatttatttattttttggtgaaagggaatgaagcaattttaatttcatgagg 174  Q
         ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  17254 cggagtgaatatttatttattttttgatgaaaaggaatgaaacaattttaatttcatgagg 17314  T

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Target: scaffold0759 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 1670 - 1731
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagaga--ttatataaacattgt 111  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  1670 agccttggcttttcagttataagacgaaaacacgccgaaaagagattttatataaacattgt 1731  T

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Target: scaffold0759; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 1614 - 1662
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagttata 72  Q
    |||||||||| |||||  |||||||||||||||||| |||| |||||||    
T  1614 aaaggtaaaactaatgtgattattcacaagccttgcgttttcagttata 1662  T

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Target: scaffold0759; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 1779 - 1815
Alignment:
Q  134 tttttggtgaaagggaatgaagcaattttaatttcat 170  Q
    |||||| |||||||||||||| |||||||||||||||    
T  1779 tttttgatgaaagggaatgaaacaattttaatttcat 1815  T

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Target: scaffold0416 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 8140 - 8079
Alignment:
Q  52 agccttgccttttgagttataagacgaaaacacgccgaaaagaga--ttatataaacattgt 111  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  8140 agccttggcttttcagttataagacgaaaacacgccgaaaagagattttatataaacattgt 8079  T

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Target: scaffold0416; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 8031 - 7995
Alignment:
Q  134 tttttggtgaaagggaatgaagcaattttaatttcat 170  Q
    |||||| |||||||||||||| |||||||||||||||    
T  8031 tttttgatgaaagggaatgaaacaattttaatttcat 7995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8196 - 8148
Alignment:
Q  24 aaaggtaaaaataatggcattattcacaagccttgccttttgagttata 72  Q
    |||||||||| |||||  |||||||||||||||||| |||| |||||||    
T  8196 aaaggtaaaactaatgtgattattcacaagccttgcgttttcagttata 8148  T

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