View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_13 (Length: 566)
Name: NF2324_low_13
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 29243669 - 29243120
Alignment:
| Q |
1 |
taaatatagattgaagtccgggtgagcgaaatatactaattcaatgaactatatgagtaaaatgaaccacactgaactataagagaccaaaccaattaaa |
100 |
Q |
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| T |
29243669 |
taaatatagattgaagtccgggtgagcgaaatatactaattcaatgaactatatgagtaaaatgaaccacactgaactataagagaccaaaccaattaaa |
29243570 |
T |
|
| Q |
101 |
tggttcatgaactgaaccataaattttcaaaagtcaattaccaaactttattaagagaactggtttataatctttaaccaaaatcatctttttactcaaa |
200 |
Q |
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| T |
29243569 |
tggttcatgaactgaaccataaattttcaaaagtcaattaccaaactttattaagagaactggtttataatctttaaccaaaatcatctttttactcaaa |
29243470 |
T |
|
| Q |
201 |
ctttataaaagaacgttaaaatataaatcagcttccaaatttttgaaaaacaataatacaaataacctaaaattacttcttcaacgcgagtgaaccctat |
300 |
Q |
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| T |
29243469 |
ctttataaaagaacgttaaaatataaatcagcttccaaatttttgaaaaacaataatacaaataacctaaaattacttcttcaacgcgagtgaaccctat |
29243370 |
T |
|
| Q |
301 |
acccaagtttcttcgactcattgactgaaatttagcccccaaatagatttcatgttgtctcaccatctctgacgatataggcctctcttatggctgctct |
400 |
Q |
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| T |
29243369 |
acccaagtttcttcgactcattgactgaaatttagcccccaaatagatttcatgttgtctcaccatctctgacgatataggcctctcttatggctgctct |
29243270 |
T |
|
| Q |
401 |
tctctttgtgcgatcatgcatgaccattctttcttttgatccagtctccctgcacccagactttggcaaccttcgttcattaagtttattgtgttggtct |
500 |
Q |
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| T |
29243269 |
tctctttgtgcgatcatgcatgaccattctttcttttgatccagtctccctgcacccagactttggcaaccttcgttcattaagtttattgtgttggtct |
29243170 |
T |
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| Q |
501 |
ccaaccccttcattcgaggtagcttcttgttcttcatcccattcaatatg |
550 |
Q |
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| T |
29243169 |
ccaaccccttcattcgaggtagcttcttgttcttcatcccattcaatatg |
29243120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 51554684 - 51554746
Alignment:
| Q |
58 |
taaaatgaaccacactgaactataagaga-ccaaaccaattaaatggttcatgaactgaacca |
119 |
Q |
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| T |
51554684 |
taaattgaaccacactgaaccataaaagaaccaaatatattaaatggttcatgaactgaacca |
51554746 |
T |
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