View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_14 (Length: 561)
Name: NF2324_low_14
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 340 - 541
Target Start/End: Complemental strand, 26836134 - 26835933
Alignment:
| Q |
340 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatagagaatatt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836134 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatagagaatatt |
26836035 |
T |
|
| Q |
440 |
tacggttaggtattttctccctggggcctgtctctcaagttctttgatgcttggatcattcaacatttgtcctagaacaattccaatttttccctttccc |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836034 |
tacggttaggtattttctccctggggcctctctctcaagttttttgatgcttggatcattcaatatttgtcctagaacaattccaatttttccctttccc |
26835935 |
T |
|
| Q |
540 |
cc |
541 |
Q |
| |
|
|| |
|
|
| T |
26835934 |
cc |
26835933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 26836440 - 26836211
Alignment:
| Q |
20 |
gacagtgccacttgtgtgtgtgagttttcaatgaccattatcatttcgtctatctnnnnnnncaatgtattagtttgcatctcccatcatctctttcatg |
119 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
26836440 |
gacagttccacttatgtgtgtgaattttctatgaccattatcatttcgtctatctaaaaaaacaatgtattagtttgcatctctcatcatctttttcatg |
26836341 |
T |
|
| Q |
120 |
gttgtgttgatactaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgatgaaagcaccaatgtgaagataagaa |
219 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26836340 |
gttgtgttgataccaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgatgaaagcaccaatgtaaagataagaa |
26836241 |
T |
|
| Q |
220 |
attaaacaaaagcaaatgtggaaatctcaa |
249 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
26836240 |
attatacaaaagcaaatgtggaaatctcaa |
26836211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 13943600 - 13943562
Alignment:
| Q |
36 |
tgtgtgagttttcaatgaccattatcatttcgtctatct |
74 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13943600 |
tgtgtgagttttcaatgactattatcatttcgtttatct |
13943562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 37457289 - 37457326
Alignment:
| Q |
28 |
cacttgtgtgtgtgagttttcaatgaccattatcattt |
65 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37457289 |
cacttgtgtgtgtgagttttcaatgactattgtcattt |
37457326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 600333 - 600288
Alignment:
| Q |
29 |
acttgtgtgtgtgagttttcaatgaccattatcatttcgtctatct |
74 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||||||||||||||||| |
|
|
| T |
600333 |
acttgtgtgtatgaattttcaataactattatcatttcgtctatct |
600288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University