View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_23 (Length: 496)
Name: NF2324_low_23
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 496
Target Start/End: Original strand, 36888667 - 36889142
Alignment:
| Q |
16 |
atagcaacaacgagaataatattttgtccaaaagaaacaagaatactagaataatgtcgttctatatcttacactctctttatctctttttgtctgattc |
115 |
Q |
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| T |
36888667 |
atagcaacaacgagaataatattttgtccaaaagaaacaagaatactagaataatgtcgttctataacttacactctcttt--------ttgtctgattc |
36888758 |
T |
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| Q |
116 |
tctcagccacacagtgaaaaggctnnnnnnnngtaacgataactacaaatcaatagttcataaaaaggaagaagacaactgaaaaatgatttacaaggca |
215 |
Q |
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| T |
36888759 |
tctcagccacacagtgaaaaagctaaaaaaaagtaacgataactacaaatcagtagttcataaaaaggaagaagacaactgaaaaatgatttacaaggca |
36888858 |
T |
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| Q |
216 |
taatagcaaattgaaaat----aaccaaagtaaagtttttcccc-tatcatatattttattcgctagctacacccctccaattaagttcacatctataac |
310 |
Q |
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| T |
36888859 |
taatagcaaattgaaaattaataaccaaagtaaagtttttccccctctcatatattttattcgctagctacacccctccaattaagttcacatctataac |
36888958 |
T |
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| Q |
311 |
ataatattagttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatannnnnnnaataagca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36888959 |
ataatattagttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatatttttttaataagca |
36889058 |
T |
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| Q |
411 |
atagattcatcagtataaaattaacggcaattgatgaatgatgatacattatgaccacgaacaaaattaatctagccatatagtaa |
496 |
Q |
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| T |
36889059 |
at--attcttcagtataaaattaacggcaattgatgaatcatgatacattatgaccacgaacaaaattaatctagccatatagtaa |
36889142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 36875285 - 36875336
Alignment:
| Q |
30 |
aataatattttgtccaaaagaaacaagaatactagaataatgtcgttctata |
81 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||||| || ||||| |
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| T |
36875285 |
aataatgttttgtccaaaagaaaaaagaatacaagaataatgttgtcctata |
36875336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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