View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_24 (Length: 494)

Name: NF2324_low_24
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_24
NF2324_low_24
[»] chr5 (8 HSPs)
chr5 (21-479)||(32384611-32385063)
chr5 (19-210)||(32392431-32392623)
chr5 (247-384)||(32392248-32392384)
chr5 (106-199)||(29151210-29151304)
chr5 (419-479)||(32391658-32391719)
chr5 (17-74)||(32573621-32573678)
chr5 (450-479)||(30658146-30658175)
chr5 (311-352)||(41790745-41790786)
[»] chr3 (1 HSPs)
chr3 (19-54)||(17224746-17224781)
[»] chr7 (3 HSPs)
chr7 (107-141)||(17970634-17970668)
chr7 (107-141)||(17976397-17976431)
chr7 (107-141)||(17982944-17982978)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 32385063 - 32384611
Alignment:
Q  21 aataaggaaagaaataaaatcgtaacataaataaatttgataatttcagccatannnnnnnncctctttgcacgcagaaaaatttaatatgatttgatct 120  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||        |||||||||| ||||||||| ||||||||||||||| |    
T  32385063 aataaggaaagaaataaaatcgttaaacaaataaatttgataatttcagccatattttttttcctctttgcatgcagaaaaacttaatatgatttgatat 32384964  T
Q  121 ttttataatgtataaagtccacactctcctataaatagttaaatagtttttaccatttatgaaattgtaaaaacccttcacaaaattatatcttaagtgt 220  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |    
T  32384963 ctttataatgaataaagtccacactctcctataaatagttaaatagtttttagcatttatgaagttgtaaaaacccttcacaaaattatatcttaagttt 32384864  T
Q  221 at--tcgtgtgctgtgtttgtcacattagcattagcacacttagaagcaacataaccaacggtctaatcataagaattcattatatttttactaactttt 318  Q
    ||  ||||||| |||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  32384863 atattcgtgtgttgtgtttgtcacattagca------cacttagaagcaacattaccaacggtctaatcataagaattcattatgtttttactaactttt 32384770  T
Q  319 catcactttttaacctctcatgctagtaaagggaaaaatcatattgttggaccatggtaaatttatctatgcacaagcagaacctattgtaattttcact 418  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  32384769 catcactttttaacctctcatgctagtaaagggaaagatcatatttctggaccatggtaaatttatctatgcacaagtagaacctattgtaattttcac- 32384671  T
Q  419 ttatttatttttataatgaaattgttcgatgaaaatgaatgtgtatttaattttgtaattg 479  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32384670 -tatttatttttataatgaaattgttcgataaaaatgaatgtgtatttaattttgtaattg 32384611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 32392623 - 32392431
Alignment:
Q  19 gaaataaggaaagaaataaaatcgtaacataaataaatttgataatttcagccatannnnnnnn-cctctttgcacgcagaaaaatttaatatgatttga 117  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||         ||||||| || ||||| |||    |||||||||||    
T  32392623 gaaataagaaaagaaataaaatcataacataaacaaatttgataatttctgccatatctttttttcctctttacatgcagacaaacaggatatgatttga 32392524  T
Q  118 tctttttataatgtataaagtccacactctcctataaatagttaaatagtttttaccatttatgaaattgtaaaaacccttcacaaaattata 210  Q
    ||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||| ||| |||||| ||||||||| |||||||||    
T  32392523 tctctttataatgtataaagtccacactcttctataaataattaagtagtttttagcatttacgaagttgtaagaacccttcataaaattata 32392431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 384
Target Start/End: Complemental strand, 32392384 - 32392248
Alignment:
Q  247 gcattagcacacttagaa-gcaacataaccaacggtctaatcataagaattcattatatttttactaacttttcatcacttttta-acctctcatgctag 344  Q
    |||||||||||||||| | | |||||||||||| |||  |||||||  |||| ||   |||| |||||||||||| ||||||||  |||||||||| |||    
T  32392384 gcattagcacacttagtatggaacataaccaactgtcccatcataaatattcttt---ttttaactaacttttcagcacttttttgacctctcatgttag 32392288  T
Q  345 taaagggaaaaatcatattgttggaccatggtaaatttat 384  Q
    | ||| |||| || ||| ||||||||||||||||||||||    
T  32392287 tcaagagaaagattataatgttggaccatggtaaatttat 32392248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 29151304 - 29151210
Alignment:
Q  106 aatatgatttgatctttttataatgtataaagtccacactctcctataaatagttaaat-agtttttaccatttatgaaattgtaaaaacccttc 199  Q
    |||||||||| |||||||||||||||||| ||||||  | ||||||  |||| ||||||   |||||| |||||||||| |||||||||| ||||    
T  29151304 aatatgattttatctttttataatgtatatagtccatgccctcctaataataattaaatgtttttttagcatttatgaagttgtaaaaactcttc 29151210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 479
Target Start/End: Complemental strand, 32391719 - 32391658
Alignment:
Q  419 ttatttatttttataatgaaattgttcgat-gaaaatgaatgtgtatttaattttgtaattg 479  Q
    |||||||||||||| |||||||||||| || ||||| ||||||| ||||| |||||||||||    
T  32391719 ttatttatttttatgatgaaattgttctatagaaaaagaatgtgcatttacttttgtaattg 32391658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 32573621 - 32573678
Alignment:
Q  17 atgaaataaggaaagaaataaaatcgtaacataaataaatttgataatttcagccata 74  Q
    |||||| ||| ||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  32573621 atgaaagaagaaaagaaatagaatcgtgacataaacaaaattgataatttcagccata 32573678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 479
Target Start/End: Original strand, 30658146 - 30658175
Alignment:
Q  450 aaaatgaatgtgtatttaattttgtaattg 479  Q
    ||||||||||||||||||||||||||||||    
T  30658146 aaaatgaatgtgtatttaattttgtaattg 30658175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 41790786 - 41790745
Alignment:
Q  311 taacttttcatcactttttaacctctcatgctagtaaaggga 352  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  41790786 taacttttcatcactttttaaccgttcatgatagtaaaggga 41790745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 17224746 - 17224781
Alignment:
Q  19 gaaataaggaaagaaataaaatcgtaacataaataa 54  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17224746 gaaataaggaaagaaataaaatcataacataaataa 17224781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 17970634 - 17970668
Alignment:
Q  107 atatgatttgatctttttataatgtataaagtcca 141  Q
    |||||||||||||| ||||||||||||||||||||    
T  17970634 atatgatttgatctatttataatgtataaagtcca 17970668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 17976397 - 17976431
Alignment:
Q  107 atatgatttgatctttttataatgtataaagtcca 141  Q
    |||||||||||||| ||||||||||||||||||||    
T  17976397 atatgatttgatctatttataatgtataaagtcca 17976431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 17982944 - 17982978
Alignment:
Q  107 atatgatttgatctttttataatgtataaagtcca 141  Q
    |||||||||||||| ||||||||||||||||||||    
T  17982944 atatgatttgatctatttataatgtataaagtcca 17982978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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