View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_25 (Length: 483)

Name: NF2324_low_25
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_25
NF2324_low_25
[»] chr8 (3 HSPs)
chr8 (9-386)||(33684647-33685024)
chr8 (413-468)||(33684565-33684620)
chr8 (110-147)||(32691763-32691800)
[»] chr7 (2 HSPs)
chr7 (110-155)||(21238837-21238882)
chr7 (110-148)||(10893870-10893908)
[»] chr1 (4 HSPs)
chr1 (110-155)||(15792983-15793028)
chr1 (110-147)||(13709206-13709243)
chr1 (110-150)||(21057803-21057843)
chr1 (109-149)||(26390133-26390173)
[»] chr4 (1 HSPs)
chr4 (110-141)||(10435087-10435118)
[»] chr6 (1 HSPs)
chr6 (110-147)||(6284663-6284700)
[»] chr5 (2 HSPs)
chr5 (113-149)||(29200799-29200835)
chr5 (120-148)||(41831748-41831776)
[»] chr3 (1 HSPs)
chr3 (110-154)||(19323443-19323487)


Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 33685024 - 33684647
Alignment:
Q  9 agcacagacactagtaatagtttgagagaatgaccaacttaaatgtaatcagatgtgtcagtgtcgtgttaaacactccttcaataaaaagtgtttgtag 108  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33685024 agcactgacactagtaatagtttgagaaaatgaccaacttaaatgtaatcagatgtgtcagtgtcgtgttaaacactccttcaataaaaagtgtttgtag 33684925  T
Q  109 taaaatgacaaaattgaatgtaatcacatgtgttagtgtcgagtcagcgacacatgtgagacaccagattcacattcgattagaagtgttggtgctacag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  33684924 taaaatgacaaaattgaatgtaatcacatgtgttagtgtcgagtcagcgacacatgtgagacaccagattcagattcgattagaagtgttggtgctatag 33684825  T
Q  209 agtatgtgaatcatatgctccaagtcgaatgaatttgacatgtgtcggtgtcacatcaatgacacgtgtgaggcactggacacacattcgatcagaagtg 308  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33684824 agtatgtgaatcatattctccaagtcgaatgaatttgacatgtgtcagtgtcacatcaatgacacgtgtgaggcactggacacacattcgatcagaagtg 33684725  T
Q  309 tctatgttatagagtatgtgaatgatatgctctaagtcaaatgaatttgacaacaaagtgaggtatatttgaaatggg 386  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33684724 tctatgctatagagtatgtgaatgatatgctctaagtcaaatgaatttgacaacaaagtgaggtatatttgaaatggg 33684647  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 33684620 - 33684565
Alignment:
Q  413 agctttaccatgcagaatgaatttattaaatatcatatcattatggtcatggtgat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33684620 agctttaccatgcagaatgaatttattaaatatcatatcattatggtcatggtgat 33684565  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 32691763 - 32691800
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgt 147  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  32691763 aaaatgacataattgaatgtaatcacatgtgtcagtgt 32691800  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 21238837 - 21238882
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgtcgagtcag 155  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||    
T  21238837 aaaatgtcaaaattgaatgtaatcacatgtgttagtgtggagtcag 21238882  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 10893908 - 10893870
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgtc 148  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  10893908 aaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 15793028 - 15792983
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgtcgagtcag 155  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||    
T  15793028 aaaatgacacaattgaacgtaatcacatgtgtcagtgtcgagtcag 15792983  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 13709206 - 13709243
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgt 147  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  13709206 aaaatgacaaaattgaatgtaatcagatgtgtcagtgt 13709243  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 21057803 - 21057843
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgtcga 150  Q
    ||||| ||| |||||||||||||| ||||||||||||||||    
T  21057803 aaaataacataattgaatgtaatcgcatgtgttagtgtcga 21057843  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26390173 - 26390133
Alignment:
Q  109 taaaatgacaaaattgaatgtaatcacatgtgttagtgtcg 149  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  26390173 taaaatgacataattgaatgtaatcacaagtgtcagtgtcg 26390133  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 10435118 - 10435087
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgt 141  Q
    ||||||||||||||||||||||||||||||||    
T  10435118 aaaatgacaaaattgaatgtaatcacatgtgt 10435087  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 6284700 - 6284663
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgt 147  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  6284700 aaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 29200835 - 29200799
Alignment:
Q  113 atgacaaaattgaatgtaatcacatgtgttagtgtcg 149  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29200835 atgacataattgaatgtaatcacatgtgttggtgtcg 29200799  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 41831776 - 41831748
Alignment:
Q  120 aattgaatgtaatcacatgtgttagtgtc 148  Q
    |||||||||||||||||||||||||||||    
T  41831776 aattgaatgtaatcacatgtgttagtgtc 41831748  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 19323487 - 19323443
Alignment:
Q  110 aaaatgacaaaattgaatgtaatcacatgtgttagtgtcgagtca 154  Q
    ||||||||| |||||||| ||||||||||||| ||||||| ||||    
T  19323487 aaaatgacataattgaatttaatcacatgtgtaagtgtcgcgtca 19323443  T

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