View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_3 (Length: 811)

Name: NF2324_low_3
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_3
NF2324_low_3
[»] chr1 (20 HSPs)
chr1 (15-412)||(38479806-38480202)
chr1 (483-788)||(38480360-38480665)
chr1 (636-734)||(11941296-11941393)
chr1 (652-738)||(47498794-47498879)
chr1 (636-701)||(6557039-6557103)
chr1 (651-738)||(3887586-3887672)
chr1 (638-738)||(2295126-2295225)
chr1 (650-737)||(36514629-36514715)
chr1 (658-736)||(10199370-10199446)
chr1 (432-466)||(38480314-38480348)
chr1 (647-701)||(44931905-44931959)
chr1 (691-744)||(836332-836385)
chr1 (649-738)||(49938777-49938865)
chr1 (638-738)||(27146196-27146295)
chr1 (272-343)||(12287397-12287468)
chr1 (650-733)||(27976639-27976720)
chr1 (649-735)||(6102187-6102271)
chr1 (650-700)||(38001663-38001712)
chr1 (650-711)||(1432572-1432632)
chr1 (638-679)||(38116199-38116240)
[»] chr7 (14 HSPs)
chr7 (252-385)||(34726596-34726730)
chr7 (635-741)||(33678807-33678912)
chr7 (650-738)||(19302516-19302603)
chr7 (638-748)||(33601351-33601460)
chr7 (646-735)||(44989626-44989715)
chr7 (638-683)||(44776920-44776965)
chr7 (651-738)||(3308205-3308292)
chr7 (650-738)||(48470074-48470161)
chr7 (640-678)||(3927953-3927991)
chr7 (656-738)||(20526476-20526557)
chr7 (658-748)||(34035937-34036026)
chr7 (649-738)||(19214358-19214446)
chr7 (649-682)||(20234545-20234578)
chr7 (650-699)||(49019937-49019986)
[»] chr2 (29 HSPs)
chr2 (178-370)||(2419845-2420028)
chr2 (651-738)||(4606955-4607041)
chr2 (650-738)||(40682348-40682435)
chr2 (638-741)||(43036584-43036685)
chr2 (654-737)||(41293120-41293202)
chr2 (180-239)||(41513835-41513894)
chr2 (693-738)||(3611256-3611301)
chr2 (638-738)||(449877-449976)
chr2 (650-738)||(1625930-1626017)
chr2 (650-741)||(7035520-7035610)
chr2 (687-738)||(26626903-26626954)
chr2 (650-733)||(36534803-36534885)
chr2 (649-735)||(2142687-2142772)
chr2 (321-363)||(33459331-33459373)
chr2 (693-738)||(16398144-16398189)
chr2 (651-732)||(16451154-16451234)
chr2 (649-738)||(32592616-32592704)
chr2 (658-738)||(33319775-33319852)
chr2 (650-738)||(18066158-18066245)
chr2 (673-741)||(43570441-43570507)
chr2 (659-738)||(11863931-11864009)
chr2 (651-738)||(13325600-13325686)
chr2 (638-677)||(43279468-43279507)
chr2 (650-738)||(7928251-7928339)
chr2 (639-735)||(16503385-16503481)
chr2 (636-681)||(24101014-24101059)
chr2 (693-738)||(40279297-40279342)
chr2 (693-738)||(40279367-40279412)
chr2 (649-702)||(42659163-42659215)
[»] chr3 (15 HSPs)
chr3 (269-381)||(15801537-15801650)
chr3 (639-738)||(21367697-21367795)
chr3 (650-733)||(26878235-26878317)
chr3 (252-385)||(3007687-3007820)
chr3 (654-733)||(26878152-26878230)
chr3 (650-738)||(402495-402582)
chr3 (638-738)||(20880506-20880605)
chr3 (650-737)||(37389214-37389300)
chr3 (693-735)||(3194259-3194301)
chr3 (638-735)||(31365129-31365225)
chr3 (650-738)||(34610759-34610846)
chr3 (638-738)||(39980759-39980858)
chr3 (649-738)||(24085290-24085378)
chr3 (649-738)||(39602163-39602250)
chr3 (650-738)||(53789416-53789501)
[»] chr4 (21 HSPs)
chr4 (638-728)||(49939892-49939981)
chr4 (650-738)||(17822818-17822905)
chr4 (651-738)||(25332805-25332891)
chr4 (286-385)||(34069073-34069176)
chr4 (639-736)||(24169295-24169391)
chr4 (650-738)||(13126529-13126616)
chr4 (642-738)||(22030233-22030328)
chr4 (315-385)||(14013906-14013977)
chr4 (639-725)||(20719746-20719831)
chr4 (640-681)||(437107-437148)
chr4 (653-748)||(1407976-1408071)
chr4 (650-738)||(25904176-25904263)
chr4 (638-738)||(54426073-54426172)
chr4 (172-215)||(16873185-16873228)
chr4 (651-738)||(39603124-39603210)
chr4 (638-681)||(49003983-49004026)
chr4 (638-741)||(55302276-55302378)
chr4 (645-735)||(30668316-30668403)
chr4 (693-738)||(825486-825530)
chr4 (636-701)||(15173242-15173306)
chr4 (650-735)||(21731609-21731693)
[»] chr6 (10 HSPs)
chr6 (636-738)||(2455021-2455119)
chr6 (649-734)||(31813195-31813279)
chr6 (651-738)||(9912145-9912231)
chr6 (638-735)||(848022-848117)
chr6 (650-738)||(20368134-20368220)
chr6 (687-738)||(9093545-9093596)
chr6 (638-701)||(30536570-30536632)
chr6 (336-370)||(6963947-6963981)
chr6 (638-703)||(24982770-24982834)
chr6 (650-735)||(34404679-34404762)
[»] chr8 (18 HSPs)
chr8 (637-732)||(1930071-1930165)
chr8 (652-738)||(33808333-33808418)
chr8 (650-738)||(43717887-43717977)
chr8 (315-369)||(34898095-34898149)
chr8 (653-734)||(32840942-32841022)
chr8 (638-738)||(3536886-3536985)
chr8 (638-738)||(18133686-18133785)
chr8 (638-681)||(28763454-28763497)
chr8 (638-701)||(35534554-35534616)
chr8 (638-736)||(35643929-35644026)
chr8 (649-738)||(26771295-26771383)
chr8 (650-702)||(27754469-27754520)
chr8 (650-738)||(38648381-38648468)
chr8 (649-736)||(27028863-27028949)
chr8 (664-738)||(10120786-10120859)
chr8 (650-703)||(1058030-1058082)
chr8 (638-675)||(9130260-9130297)
chr8 (691-736)||(31751550-31751595)
[»] chr5 (25 HSPs)
chr5 (637-738)||(41981643-41981741)
chr5 (636-733)||(7808540-7808636)
chr5 (649-738)||(9202700-9202788)
chr5 (639-735)||(7985002-7985097)
chr5 (650-738)||(10639983-10640070)
chr5 (651-738)||(39105494-39105581)
chr5 (647-737)||(1464970-1465059)
chr5 (254-355)||(21134410-21134511)
chr5 (638-738)||(16937824-16937923)
chr5 (638-738)||(42100341-42100440)
chr5 (691-738)||(42099865-42099912)
chr5 (687-740)||(8334599-8334652)
chr5 (653-738)||(16457935-16458019)
chr5 (640-681)||(42569555-42569596)
chr5 (690-738)||(34160761-34160809)
chr5 (647-719)||(39248148-39248218)
chr5 (636-735)||(6096580-6096678)
chr5 (669-736)||(17258856-17258921)
chr5 (293-356)||(29284066-29284129)
chr5 (650-704)||(11064730-11064783)
chr5 (640-738)||(19460330-19460426)
chr5 (172-218)||(32811125-32811171)
chr5 (648-681)||(5721176-5721209)
chr5 (640-701)||(7705941-7706001)
chr5 (649-738)||(11700193-11700280)
[»] scaffold0221 (1 HSPs)
scaffold0221 (638-741)||(22258-22360)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 38479806 - 38480202
Alignment:
Q  15 cacagacacagactaatacaagggaagacaataggaatgacctgtgagcaagggatctaggaaagggtgatgcttacctagcatctacttctgaacgcac 114  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38479806 cacagacacagactaacacaagggaagacaataggaatgacatgtgagcaagggatctaggaaagggtgatgcttacctagcatctacttctgaacgcac 38479905  T
Q  115 aacaattaaatagggtagataggtattttaatccttaaaagggtaagggtcgagcaattagtacctcaaatttgcaaaatagcgatttagtctcttaaat 214  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38479906 aacaattaaatagagtagataggtattttagtccttaaaagggtaagg-tcgagcaattagtacctcaaatttgcaaaatagcgatttagtctgttaaat 38480004  T
Q  215 tgaaaagcatcaatcaatttagtcttctcnnnnnnncttcaaatttttcaccacaattttacaggttctatgtttgtcttgatgcaacaaaaaactagtt 314  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480005 tgaaaagcatcaatcaatttagtcttctcttttttgcttcaaatttttcaccacaattttacaggttctatgtttgtcttgatgcaacaaaaaactagtt 38480104  T
Q  315 aagtcgatatgtatgtcttctattggttttaatggatgtttactaaagaaatatttgatggagggactaaactgacgagccttacaatttatgcatat 412  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  38480105 aagtcgatatgtatgtcttttattggttttaatggatgtttactaaagaaatatttgatggagggactaaactgaagtctcttacaatttatgcatat 38480202  T

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Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 483 - 788
Target Start/End: Original strand, 38480360 - 38480665
Alignment:
Q  483 tatcaaccattgatttatatgttgaaaatgttgatataactaattctgactttactctccaaagctagttgcttgtatgaaactagcttgaccccatatc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38480360 tatcaaccattgatttatatgttgaaaatgttgatataactaattctcactttactctccaaagctagttgcttatatgaaactagcttgaccccatatc 38480459  T
Q  583 caaacacacaaaacagaaaattaccaatcaagttgttctaaatgctaatttaaaacttatctagtagcataagttttgtgagactatttgggagaacttg 682  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38480460 catacacacaaaacagaaaattaccaatcaagctgttctaaatgctaatttaaaacttatctagtagcataagttttgtgagactatttgggagaactaa 38480559  T
Q  683 tgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagttttcttagatatcatgcatgagaaaccttcagactttaaatcaaa 782  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  38480560 tgaaaaatagcttatgacattgctcataaactgtttttagcttattttcataagttttctaagatatcatgcatgagaaaccttcagactttaaaacaaa 38480659  T
Q  783 caaatc 788  Q
    ||||||    
T  38480660 caaatc 38480665  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 636 - 734
Target Start/End: Complemental strand, 11941393 - 11941296
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcata 734  Q
    ||||| |||| ||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||    
T  11941393 aacttttctactagcatatgttatgtgagactgtttgggagagcttatga-aaatagcttataacattgttcataagctgttttcagcttattttcata 11941296  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 738
Target Start/End: Original strand, 47498794 - 47498879
Alignment:
Q  652 taagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||| || || | ||||||||||||| ||| ||||||||||||| |||| ||||||  |||||||||||||||||||||||||    
T  47498794 taagttttttgtgattgtttgggagaacttatga-aaatagcttatgatattgttcataagttgtttttagcttattttcataagtt 47498879  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 701
Target Start/End: Complemental strand, 6557103 - 6557039
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||||||| || ||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  6557103 aacttatctactaacataagttttgtgagactatttgagagaacttatga-aaatagcttatgaca 6557039  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 738
Target Start/End: Original strand, 3887586 - 3887672
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||| || || ||||| ||||||| ||| ||| | |||||||||||| |||||| ||||||||| ||||||||||||||||    
T  3887586 ataagttttgtaaggctgtttggaagaacttatga-aaacatcttatgacattgttcataagctgtttttaacttattttcataagtt 3887672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 2295225 - 2295126
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||| |  |||||| || | || | |||||||||| ||||    
T  2295225 cttatctactggcataagttttgtgagactgtttgggagaacttatga-aaacagcttatgacaattttcataagctctattcaacttattttcacaagt 2295127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 650 - 737
Target Start/End: Original strand, 36514629 - 36514715
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||||| ||||||| || |||||||||| ||| ||||| |||||||||||| | | || ||||||| ||||| |||||||||||    
T  36514629 cataagttttttgagactgttagggagaacttatga-aaataacttatgacattgtttagaagctgttttcagctttttttcataagt 36514715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 658 - 736
Target Start/End: Original strand, 10199370 - 10199446
Alignment:
Q  658 ttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||| || ||||||  |||||| ||||||||||||||||    
T  10199370 ttgtgacactatttgggagaactcatga-aaatagcttatgaca-tgttcataagttgttttcagcttattttcataag 10199446  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 466
Target Start/End: Original strand, 38480314 - 38480348
Alignment:
Q  432 tagaaacaaattacatctagtggagggaacatgtg 466  Q
    |||||||||||||||||||||||||||||||||||    
T  38480314 tagaaacaaattacatctagtggagggaacatgtg 38480348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 701
Target Start/End: Original strand, 44931905 - 44931959
Alignment:
Q  647 tagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||||||||||| |||||| |||||||||| || ||| |||||||||||||||    
T  44931905 tagcataagttttgagagactgtttgggagaatttatgaaaaatagcttatgaca 44931959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 744
Target Start/End: Original strand, 836332 - 836385
Alignment:
Q  691 agcttatgacattgctcataaactgtttttagcttattttcataagttttctta 744  Q
    ||||||||||| |||||||||  ||||||||||| |||||||| ||||||||||    
T  836332 agcttatgacaatgctcataagttgtttttagctcattttcattagttttctta 836385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 738
Target Start/End: Complemental strand, 49938865 - 49938777
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||| | ||||||||||||| ||| ||| ||||||||||| |  ||| || || |||| | ||||||||||||||||    
T  49938865 gcataagttttgtgagattgtttgggagaacttatga-aaacagcttatgacaattttcaaaagcttttttcaacttattttcataagtt 49938777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 738
Target Start/End: Original strand, 27146196 - 27146295
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | |||||||||||||||||||  |||| |||||||  | |||| | |||||||||||| |||||| ||||||| | |||| |||| |||||    
T  27146196 cttatctattggcataagttttgtgagacttgttggaagaacttaag-gaaacaacttatgacattgttcataagctgttttcaacttactttcgtaagt 27146294  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 343
Target Start/End: Complemental strand, 12287468 - 12287397
Alignment:
Q  272 tttacaggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttt 343  Q
    |||| |||||||||||||||| ||||||||||| | |||| | ||||  |||||||||||||  ||||||||    
T  12287468 tttaaaggttctatgtttgtcatgatgcaacaagagactattgaagttaatatgtatgtctttaattggttt 12287397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 733
Target Start/End: Complemental strand, 27976720 - 27976639
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcat 733  Q
    |||||||||||| ||||| ||||| | ||||| ||| |||||||||||||||||  |||||| || |||| |||||||||||||    
T  27976720 cataagttttgttagactgtttggaa-aacttttga-aaatagcttatgacatttttcataagcttttttcagcttattttcat 27976639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 735
Target Start/End: Complemental strand, 6102271 - 6102187
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||| |||||||||| | ||||||||||| | ||| ||| ||||||||| |||| ||||||| |||||| ||||||||| |||||    
T  6102271 gcataaattttgtgagattgtttgggagaac-tatga-aaacagcttatgatattgttcataaattgttttcagcttatttccataa 6102187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 700
Target Start/End: Complemental strand, 38001712 - 38001663
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgac 700  Q
    |||||||||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  38001712 cataagttttgtgagactgtttgggagaacttatga-aaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 711
Target Start/End: Complemental strand, 1432632 - 1432572
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataa 711  Q
    ||||| |||||||||||| ||||| ||||||| ||| ||||||| |||||||||| ||||||    
T  1432632 cataaattttgtgagactgtttggaagaacttatga-aaatagcgtatgacattgttcataa 1432572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 679
Target Start/End: Original strand, 38116199 - 38116240
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaac 679  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  38116199 cttatctactagcataggttttgtgagactatttgagagaac 38116240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 252 - 385
Target Start/End: Original strand, 34726596 - 34726730
Alignment:
Q  252 ttcaaatttttcaccacaattttacaggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggat 351  Q
    |||||||||| || | |||||| | |||||||||| |||| |||||||| ||||| |||| ||||||| |||||||| |||| |||||||||| ||||||    
T  34726596 ttcaaattttccatctcaatttaaaaggttctatgcttgttttgatgcagcaaaagactatttaagtcaatatgtatctcttttattggttttcatggat 34726695  T
Q  352 gtttactaaagaaata-tttgatggagggactaaa 385  Q
    | ||||| |||||||| ||||||||||||||||||    
T  34726696 gcttactgaagaaatattttgatggagggactaaa 34726730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 635 - 741
Target Start/End: Complemental strand, 33678912 - 33678807
Alignment:
Q  635 aaacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcata 734  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||| ||| ||| | ||||| |||||| |||| |  |||||| | |||||||||| |    
T  33678912 aaacttatctacttgcataagttttgtgagacaatttgggagaacttatga-aaacaacttataacattgttcatgagatgttttcaacttattttcaca 33678814  T
Q  735 agttttc 741  Q
    |||||||    
T  33678813 agttttc 33678807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 19302516 - 19302603
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||| |||||||||||| || ||| ||| ||||||||||| |  ||||||||| |||| | ||||||||||||||||    
T  19302516 cataagttttgtgagaatatttgggagaatttatga-aaacagcttatgacaattttcataaacttttttcaacttattttcataagtt 19302603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 748
Target Start/End: Original strand, 33601351 - 33601460
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | ||||||||||||||||||| |||  |||||||| ||| ||| ||||||||||| |  |||||| || |||| ||||||  |||||||||    
T  33601351 cttatctattggcataagttttgtgagactcttttcgagaacttatga-aaacagcttatgacacttttcataagcttttttcagcttaaattcataagt 33601449  T
Q  738 tttcttagata 748  Q
    | ||| |||||    
T  33601450 tctctaagata 33601460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 646 - 735
Target Start/End: Original strand, 44989626 - 44989715
Alignment:
Q  646 gtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttt-tagcttattttcataa 735  Q
    |||||||||||||||||||||| ||||||| ||||| ||| ||| | ||| |||||||| ||| || |||||||  |||||||||||||||    
T  44989626 gtagcataagttttgtgagactgtttgggaaaacttatga-aaacaacttctgacattgttcacaagctgttttgcagcttattttcataa 44989715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 683
Target Start/End: Original strand, 44776920 - 44776965
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgt 683  Q
    |||||||| || |||||||||||||||| |||||||||||||||||    
T  44776920 cttatctactaccataagttttgtgagattatttgggagaacttgt 44776965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 651 - 738
Target Start/End: Original strand, 3308205 - 3308292
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca-ttgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||| || |||| ||||||||||||| ||| |||||||||||| || || ||||||| || |||| |||||||||| |||||||    
T  3308205 ataagttttatgtgactgtttgggagaacttttga-aaatagcttatgccattttctcataagcttttttcagcttattttaataagtt 3308292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Complemental strand, 48470161 - 48470074
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||| ||||| | ||||||||||||| ||| ||| |||||||| ||||  |||||| || |||| ||||||| ||||||||||    
T  48470161 cataagttttatgagattgtttgggagaacttatga-aaacagcttatggcatttttcataagcttttttgagcttatgttcataagtt 48470074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 678
Target Start/End: Original strand, 3927953 - 3927991
Alignment:
Q  640 tatctagtagcataagttttgtgagactatttgggagaa 678  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  3927953 tatctactagcataagttttgtgagactatttgagagaa 3927991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 738
Target Start/End: Complemental strand, 20526557 - 20526476
Alignment:
Q  656 ttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||| |||| |||||||| ||| ||| || |||| |||||  || ||| ||||||||||||||||||||| ||||    
T  20526557 ttttgtgagactgtttgagagaacttatga-aaacagtttatcacatttttcgtaagctgtttttagcttattttcattagtt 20526476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 748
Target Start/End: Complemental strand, 34036026 - 34035937
Alignment:
Q  658 ttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagttttcttagata 748  Q
    ||||||||||| |||| ||||||| ||| ||||| |||||||||||| ||||||  |||||| | |||||||||  ||||| ||| |||||    
T  34036026 ttgtgagactacttggaagaacttatga-aaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagata 34035937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 19214358 - 19214446
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||| | ||||||||||||| ||| ||| |||  |||||| |  |||||||||  ||| | ||||||||||||||||    
T  19214358 gcataagttttgtgagattgtttgggagaacttatga-aaacagcaaatgacaattttcataaacttgtttcaacttattttcataagtt 19214446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 682
Target Start/End: Complemental strand, 20234578 - 20234545
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttg 682  Q
    ||||||||||||||||||| ||||||||||||||    
T  20234578 gcataagttttgtgagactttttgggagaacttg 20234545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 699
Target Start/End: Complemental strand, 49019986 - 49019937
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatga 699  Q
    |||| ||||||||||||| ||||||||||||||||  ||| |||||||||    
T  49019986 catatgttttgtgagactgtttgggagaacttgtggaaaaaagcttatga 49019937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 2420028 - 2419845
Alignment:
Q  178 cctcaaatttgcaaaatagcgatttagtctcttaaattgaaaagcatcaatcaatttagtcttctcnnnnnnncttcaaatttttcaccacaattttaca 277  Q
    |||||||||||  ||||||| ||||||||||||||||| ||||  |||||||||||||||||| |         |||||||||| ||||||||||| | |    
T  2420028 cctcaaatttgtgaaatagcaatttagtctcttaaatttaaaaatatcaatcaatttagtcttttt--------ttcaaattttgcaccacaatttaa-a 2419938  T
Q  278 ggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggatgtttactaaagaaatattt 370  Q
    |||| ||   |||| |||||||||||||| |||| |||| || |||||||||||||  ||||||||| ||||||||| | |||||||||||||    
T  2419937 ggttttacacttgttttgatgcaacaaaagactatttaattctatatgtatgtctttcattggttttgatggatgttcaataaagaaatattt 2419845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 651 - 738
Target Start/End: Complemental strand, 4607041 - 4606955
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||| | ||| ||||||||||||||||||||||    
T  4607041 ataagttttgtgagactatttgggagaacttgtga-aaacaacttatgacattgttcatgagctgcttttagcttattttcataagtt 4606955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 40682348 - 40682435
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||| | ||||||||||||||| | |||||||||||||||||| ||||||  |||||| | ||||||||||||||||    
T  40682348 cataagttttgtgagattgtttgggagaacttgtta-aaatagcttatgacattgttcataagttgttttcaacttattttcataagtt 40682435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 741
Target Start/End: Complemental strand, 43036685 - 43036584
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    ||||||||||  |||||||||||||||| ||||||||| ||||| |||| || | |||||||||||  |||||||||| |||||||||| ||||||||||    
T  43036685 cttatctagttacataagttttgtgagagtatttgggaaaacttatgag-aacatcttatgacattattcataaactg-ttttagcttactttcataagt 43036588  T
Q  738 tttc 741  Q
    ||||    
T  43036587 tttc 43036584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 654 - 737
Target Start/End: Original strand, 41293120 - 41293202
Alignment:
Q  654 agttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||||||||||||||||||||||| | | ||| ||||||||||||| | ||||| ||||||| ||||||| |||||||||    
T  41293120 agttttgtgagactatttgggagaacttat-aaaaacagcttatgacatttcgcataagctgttttcagcttatattcataagt 41293202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 41513835 - 41513894
Alignment:
Q  180 tcaaatttgcaaaatagcgatttagtctcttaaattgaaaagcatcaatcaatttagtct 239  Q
    |||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||||    
T  41513835 tcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtct 41513894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 3611301 - 3611256
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  3611301 cttatgacattattcataaactgtttttagcttattttcataagtt 3611256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 449976 - 449877
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| ||||||||||||| ||||| | |||||||| |||| ||| ||| |||||||||||||  |||||| || |||||| |||| ||| ||||||    
T  449976 cttatctactagcataagttttatgagattgtttgggaggacttttga-aaacagcttatgacatttttcataagctatttttaacttaatttgataagt 449878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 738
Target Start/End: Complemental strand, 1626017 - 1625930
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||| |||||||||| |||||||| ||| || |||||||||||| || ||||||  |||||| |||| |||||| ||||||    
T  1626017 cataagttttgtaagactatttgagagaacttatga-aagtagcttatgacaatgttcataagatgttttcagctgattttcgtaagtt 1625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 650 - 741
Target Start/End: Original strand, 7035520 - 7035610
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagttttc 741  Q
    |||||||||||||||||| ||| | ||||||| || |||| |||||||||||  | ||||||  ||||||  ||||||||||||||||||||    
T  7035520 cataagttttgtgagactgttttgaagaacttatg-gaaacagcttatgacacagttcataaggtgttttccgcttattttcataagttttc 7035610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 26626954 - 26626903
Alignment:
Q  687 aaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||| |||||| ||||||| || |||||||||||||||    
T  26626954 aaatagcttatgacattgttcataatctgttttcaggttattttcataagtt 26626903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 650 - 733
Target Start/End: Complemental strand, 36534885 - 36534803
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcat 733  Q
    |||||||||||||||||| ||||||| ||||| ||| ||| ||||||| | |||| |||||| || |||| |||||||||||||    
T  36534885 cataagttttgtgagactgtttgggataacttatga-aaacagcttataaaattgttcataatctattttcagcttattttcat 36534803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 735
Target Start/End: Complemental strand, 2142772 - 2142687
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    ||||||||||| ||||||| ||||||||||||| ||| ||| |  || ||||| || |||| | |||||||||||||||||||||||    
T  2142772 gcataagttttatgagactgtttgggagaacttatga-aaacaagttgtgacaatgttcattagctgtttttagcttattttcataa 2142687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 33459331 - 33459373
Alignment:
Q  321 atatgtatgtcttctattggttttaatggatgtttactaaaga 363  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  33459331 atatgtatgtcttttattggttttgatggatgtttactaaaga 33459373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 16398189 - 16398144
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  16398189 cttatgacattgctcgtaagctgttttcagcttattttcataagtt 16398144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 732
Target Start/End: Complemental strand, 16451234 - 16451154
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttca 732  Q
    ||||||| ||||||||  ||||||||||||| ||| ||| | |||||||||||| |||| | ||||||| ||||||||||||    
T  16451234 ataagttctgtgagaccgtttgggagaacttatga-aaacaacttatgacattgttcatgagctgttttcagcttattttca 16451154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 738
Target Start/End: Complemental strand, 32592704 - 32592616
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||| ||| |||||||||||||||| ||| |||||||||| |||| |  |||||| || || | | ||||||||||||||||    
T  32592704 gcataagttttgggagtctatttgggagaacttatga-aaatagcttacgacaattttcataagcttttctcaacttattttcataagtt 32592616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 738
Target Start/End: Original strand, 33319775 - 33319852
Alignment:
Q  658 ttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||| ||||||||||||| | | |||||||||||||||||  | |||| || |||| ||||||||||||||||||    
T  33319775 ttgtgagactgtttgggagaactt-ttataaatagcttatgacatt--taataagcttttttcagcttattttcataagtt 33319852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Complemental strand, 18066245 - 18066158
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||| ||| ||| | | ||||| ||| ||| ||||||||||||||||||||| || |||| | ||||||||| ||||||    
T  18066245 cataagttttgtgaaactgttttgtacaacttatga-aaacagcttatgacattgctcataagctattttcaccttattttcttaagtt 18066158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 673 - 741
Target Start/End: Complemental strand, 43570507 - 43570441
Alignment:
Q  673 ggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagttttc 741  Q
    ||||||||| ||| ||| |||||||||||||| |||||| || ||||||||||||||||||||| ||||    
T  43570507 ggagaacttatga-aaacagcttatgacattgttcataagct-tttttagcttattttcataagctttc 43570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 738
Target Start/End: Complemental strand, 11864009 - 11863931
Alignment:
Q  659 tgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||| ||||||||||| | ||| ||| | |||||||||||  ||||||||| |||||| |||||||| |||||||    
T  11864009 tgtgagactgtttgggagaacatttga-aaacaacttatgacatttttcataaactttttttaacttattttaataagtt 11863931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 738
Target Start/End: Complemental strand, 13325686 - 13325600
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||| ||||| | || |||||||||| ||| ||| ||||||||||||| | ||||| || |||| |||| |||||||||||||    
T  13325686 ataagttttatgagattgttcgggagaacttttga-aaacagcttatgacatttcacataagcttttttcagctcattttcataagtt 13325600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 677
Target Start/End: Original strand, 43279468 - 43279507
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggaga 677  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  43279468 cttatctactagcataagttttgtgagactgtttgggaga 43279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 7928251 - 7928339
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatg-acattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||| ||||||||| || |  ||||||| ||| ||| |||||||| |||||| ||||||  |||||| ||||||||||||||||||    
T  7928251 cataagttgtgtgagactgttagaaagaacttttga-aaacagcttatggacattgttcataagttgttttcagcttattttcataagtt 7928339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 735
Target Start/End: Complemental strand, 16503481 - 16503385
Alignment:
Q  639 ttatctagtagcataagtt-ttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    ||||||||| ||||||||  |||||| ||| ||||||||| |||  |||||||||||||||||||  | ||||| | | ||| |||||||||||||||    
T  16503481 ttatctagtggcataagtacttgtgacactgtttgggagagctta-gagaaatagcttatgacatgtcacataagccggtttcagcttattttcataa 16503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 24101059 - 24101014
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaactt 681  Q
    ||||||| || || |||||||||||||||||| |||||||||||||    
T  24101059 aacttatatattatcataagttttgtgagactgtttgggagaactt 24101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 40279342 - 40279297
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||| ||||| |||||||||||||| |||| |||||||||||||    
T  40279342 cttatggcattgttcataaactgttttcagctaattttcataagtt 40279297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 40279412 - 40279367
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||| ||||| |||||||||||||| |||| |||||||||||||    
T  40279412 cttatggcattgttcataaactgttttcagctaattttcataagtt 40279367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 702
Target Start/End: Original strand, 42659163 - 42659215
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacat 702  Q
    ||||||||||||||||||| |||||||||| || ||| ||| ||||||||||||    
T  42659163 gcataagttttgtgagactgtttgggagaagttttga-aaacagcttatgacat 42659215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 6e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 269 - 381
Target Start/End: Complemental strand, 15801650 - 15801537
Alignment:
Q  269 aattttacaggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggatgtttactaaagaaata- 367  Q
    ||||||| |||||||||||||||||||||||| ||||| |||| |||| || || ||||||| || |||| |||||||| |||||||||||||||| ||     
T  15801650 aattttaaaggttctatgtttgtcttgatgcatcaaaagactatttaactcaatgtgtatgttttttatttgttttaattgatgtttactaaagaagtat 15801551  T
Q  368 tttgatggagggac 381  Q
    ||||||||||||||    
T  15801550 tttgatggagggac 15801537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 738
Target Start/End: Complemental strand, 21367795 - 21367697
Alignment:
Q  639 ttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||  ||||||||||||||| |||| ||||||||||||| ||| ||| |||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  21367795 ttatctaccagcataagttttgtgggactgtttgggagaacttatga-aaacagcttatgacattgttcacaagctgttttcagcttattttcataagtt 21367697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 650 - 733
Target Start/End: Complemental strand, 26878317 - 26878235
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcat 733  Q
    ||||||||  |||| ||| |||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  26878317 cataagttgcgtgaaactgtttgagagaacttgtga-aaatagcttatgacattgttcataaactgttttcagcttattttcat 26878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 252 - 385
Target Start/End: Complemental strand, 3007820 - 3007687
Alignment:
Q  252 ttcaaatttttcaccacaattttacaggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggat 351  Q
    |||||||||| ||||||||||||  |||||||||| |||| |  ||||| ||||| |||| ||| ||| | ||||||||||| ||  || ||| ||||||    
T  3007820 ttcaaattttacaccacaattttgaaggttctatgcttgtttcaatgca-caaaagactatttatgtcaacatgtatgtcttttaccggctttgatggat 3007722  T
Q  352 gtttactaaagaaata-tttgatggagggactaaa 385  Q
    |||| ||||||||||| ||||||||||||||||||    
T  3007721 gtttgctaaagaaatattttgatggagggactaaa 3007687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 654 - 733
Target Start/End: Complemental strand, 26878230 - 26878152
Alignment:
Q  654 agttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcat 733  Q
    |||||||||||||| |||||||||| |||||| |||||| | ||||||||| |||||||||||||| ||| |||||||||    
T  26878230 agttttgtgagactgtttgggagaatttgtga-aaatagttaatgacattgttcataaactgttttcagcatattttcat 26878152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 402495 - 402582
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||  ||||| ||||||||||| | ||| ||| |||||||||||||| |||||| ||||||| |||||| ||||| |||||    
T  402495 cataagttttgcaagactgtttgggagaacgtatga-aaacagcttatgacattgttcataagctgttttcagcttaatttcacaagtt 402582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 20880605 - 20880506
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | ||||||||||  | ||||||||||||||||| | ||| ||| ||||||||||| |  |||||| || |||| |||||||||||||||||    
T  20880605 cttatctacttgcataagtttccttagactatttgggagaacctatga-aaacagcttatgacaattttcataagcttttttgagcttattttcataagt 20880507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 650 - 737
Target Start/End: Complemental strand, 37389300 - 37389214
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||||||||||||| || |||||||||| ||| ||| | |||||||||||| ||| |  ||| |||||||||||| ||||||||    
T  37389300 cataagttttgtgagactcttcgggagaacttatga-aaacaacttatgacattgttcaaatgctgcttttagcttattctcataagt 37389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 735
Target Start/End: Original strand, 3194259 - 3194301
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  3194259 cttatgacattgatcataagctgtttttagcttattttcataa 3194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 735
Target Start/End: Original strand, 31365129 - 31365225
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||| | ||||||||||||||||||| ||||||||||||| ||| ||  ||||||||||| |  |||||| || |||| | || ||||||||||    
T  31365129 cttatctattggcataagttttgtgagactgtttgggagaacttatga-aagcagcttatgacaattttcataagcttttttcaactcattttcataa 31365225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 34610759 - 34610846
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||   ||||||||||||||||| ||| || | ||||||||||||| ||||||   ||||| |||| |||||||||||||    
T  34610759 cataagttttgtacaactatttgggagaacttatgaaaact-gcttatgacattgttcataagtggttttcagctgattttcataagtt 34610846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 39980858 - 39980759
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| ||||||||||||||||||||| |||  |||||||| ||| ||| ||||||||||     |||||| || |||| | |||||||||||||||    
T  39980858 cttatctactagcataagttttgtgagactgtttaagagaacttatga-aaacagcttatgactggtttcataagcttttttcaacttattttcataagt 39980760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 24085290 - 24085378
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||||  || ||||||||| ||| ||| ||||||||  | || |||||  ||||||| |||||||||||| |||||    
T  24085290 gcataagttttgtgagactggtttggagaacttatga-aaacagcttatggtactgttcatacgctgttttcagcttattttcacaagtt 24085378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 39602163 - 39602250
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||| ||||||||||| |||||||| ||| ||| ||| | | |||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  39602163 gcatcagttttgtgaggctatttggaagagcttatga-agacagcttatgacat-gttcataaattgttttcaacttattttcataagtt 39602250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 53789416 - 53789501
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||||  ||| |||||||| || |||| ||||||||||| |  |||||| || |||| |||||| |||||||||||    
T  53789416 cataagttttgtgagact--ttgagagaacttttg-gaaacagcttatgacacttttcataagcttttttcagcttaatttcataagtt 53789501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 638 - 728
Target Start/End: Original strand, 49939892 - 49939981
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttatt 728  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||||| |||||| ||||||| ||||||||    
T  49939892 cttatctactagcataagctttgtgagactatttggaagaacttatga-aaagagcttatgacattgttcataagctgttttcagcttatt 49939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 17822818 - 17822905
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||| ||||||||||||| ||||||| | ||| ||| |||||||||||||  |||||| || |||||||||||||||||||||||    
T  17822818 cataagttctgtgagactatttaggagaacatatga-aaacagcttatgacatttttcataagctttttttagcttattttcataagtt 17822905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 738
Target Start/End: Complemental strand, 25332891 - 25332805
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||||||||||||||||| || ||| | |||||| ||||  ||||||  |||||| ||||||||||||||||||    
T  25332891 ataagttttgtgagactatttgggagaacttgcga-aaacaacttatggcattattcataagttgttttcagcttattttcataagtt 25332805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 34069176 - 34069073
Alignment:
Q  286 gtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggatgtttac----taaagaaatattt-gatggaggga 380  Q
    |||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||||||| | ||||||||||||    |||||||||||||  |||||||||    
T  34069176 gtttgttttgatgcaacaaagaactatttaagtcgatatgtacgtcttc-attggttcttatggatgtttactaattaaagaaatatttaaatggaggga 34069078  T
Q  381 ctaaa 385  Q
    |||||    
T  34069077 ctaaa 34069073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 736
Target Start/End: Complemental strand, 24169391 - 24169295
Alignment:
Q  639 ttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    ||||||| | |||||||||||||||||||||||| |||||||| | | |||||||||||||||||  ||||||  | |||| | ||||||||||||||    
T  24169391 ttatctactggcataagttttgtgagactatttgagagaactt-ttaaaaatagcttatgacatttttcataagattttttcaacttattttcataag 24169295  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 13126529 - 13126616
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||| ||||| ||||||| | | ||| |||||||||||||  |||||| || |||| ||||||||||||||||||    
T  13126529 cataagttttgtgagactgtttggaagaacttataa-aaacagcttatgacatttatcataagcttttttcagcttattttcataagtt 13126616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 642 - 738
Target Start/End: Complemental strand, 22030328 - 22030233
Alignment:
Q  642 tctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||| |||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |  ||| || || || | || |||||||||||||||    
T  22030328 tctattagcataagttttgtgagcctatttgggagaacttatga-aaacagcttatgacaattttcaaaagcttttctcaggttattttcataagtt 22030233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 14013977 - 14013906
Alignment:
Q  315 aagtcgatatgtatgtcttctattggttttaatggatgtttactaaagaaata-tttgatggagggactaaa 385  Q
    ||||| ||||||| |||||  || |||||| |||||||||||||||||||||| |||||| |||||||||||    
T  14013977 aagtcaatatgtaggtctttcatcggttttgatggatgtttactaaagaaatattttgatagagggactaaa 14013906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 725
Target Start/End: Complemental strand, 20719831 - 20719746
Alignment:
Q  639 ttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagctt 725  Q
    ||||||| |||||||||||||||| |||||||||| |||||||  || ||| |||||||||||||| |  ||| ||||||| |||||    
T  20719831 ttatctactagcataagttttgtgcgactatttggaagaacttaaga-aaacagcttatgacattgtttgtaagctgttttcagctt 20719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 681
Target Start/End: Original strand, 437107 - 437148
Alignment:
Q  640 tatctagtagcataagttttgtgagactatttgggagaactt 681  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  437107 tatctagtagcataacttttgtgagactatttgggaaaactt 437148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 653 - 748
Target Start/End: Complemental strand, 1408071 - 1407976
Alignment:
Q  653 aagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgttttt-agcttattttcataagttttcttagata 748  Q
    |||||||||||||| |||||  ||| |||| || ||| |||||||||||||  |||||| |||||||| ||||||| ||||||| ||||| ||||||    
T  1408071 aagttttgtgagacgatttgatagagcttgaga-aaacagcttatgacatttttcataagctgtttttcagcttatcttcataaattttcctagata 1407976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 25904176 - 25904263
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||| |||||||||||| ||||||||| ||| ||| ||| |||||||| ||||  |||||| || |||| |||||||||| |||||||    
T  25904176 cataaattttgtgagactgtttgggagagcttatga-aaacagcttatgccatttttcataagcttttttcagcttatttttataagtt 25904263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 54426172 - 54426073
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | |||||||||||||||||||  ||||||||||||  || ||| ||||||||||| |  |||||| || |||| |  ||||||||||||||    
T  54426172 cttatctactggcataagttttgtgagactgcttgggagaacttagga-aaacagcttatgacaattttcataagcttttttcaagttattttcataagt 54426074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 16873228 - 16873185
Alignment:
Q  172 ttagtacctcaaatttgcaaaatagcgatttagtctcttaaatt 215  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  16873228 ttagtacctcaaatttgcaaaatagcaacttagtctcgtaaatt 16873185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 738
Target Start/End: Original strand, 39603124 - 39603210
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||| |||||||||||||  || ||| ||||||||||| |  | |||| || ||||||  |||||||||||||||    
T  39603124 ataagttttgtgagactgtttgggagaacttagga-aaacagcttatgacaatttttataagctttttttaagttattttcataagtt 39603210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 681
Target Start/End: Original strand, 49003983 - 49004026
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaactt 681  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||    
T  49003983 cttatctactagcttaagttttgtgagactatttgagagaactt 49004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 741
Target Start/End: Complemental strand, 55302378 - 55302276
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | |||||||||||||||| || ||  ||| ||||| | ||||| ||||||||||| |  || ||| || |||| |||||||||||||||||    
T  55302378 cttatctaatggcataagttttgtgagcctgttccggaaaacttat-agaaacagcttatgacaattttcgtaagcttttttcagcttattttcataagt 55302280  T
Q  738 tttc 741  Q
    ||||    
T  55302279 tttc 55302276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 735
Target Start/End: Original strand, 30668316 - 30668403
Alignment:
Q  645 agtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||||| |  |||||| || |||| |||||| ||||||||    
T  30668316 agtagcataagttttttgagact-ttttggagaacttgtga-aaacagcttatgacacttttcataagct-ttttcagcttaatttcataa 30668403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 825486 - 825530
Alignment:
Q  693 cttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||    
T  825486 cttatgacat-gctcattaactgttttcagcttattttcataagtt 825530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 701
Target Start/End: Original strand, 15173242 - 15173306
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||||||| |  |||||||||||||||||| |||||||||  || ||| |||||||||||||||    
T  15173242 aacttatctactgacataagttttgtgagactgtttgggagactttatga-aaatagcttatgaca 15173306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 735
Target Start/End: Original strand, 21731609 - 21731693
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||||||||||| | ||||||||||||| ||| ||| ||||||| ||| |  ||||||||| |||| | |||| ||||||||    
T  21731609 cataagttttgtgagattgtttgggagaacttatga-aaacagcttatcacaattttcataaacttttttcaacttactttcataa 21731693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 636 - 738
Target Start/End: Complemental strand, 2455119 - 2455021
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||||| || |||||||||||||||||| ||||||||||||| ||| ||    |||||||||||| |||||| ||||||| ||||||||||||| |    
T  2455119 aacttatctactaacataagttttgtgagactgtttgggagaacttctgaaaa----cttatgacattgttcataacctgttttcagcttattttcatta 2455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 649 - 734
Target Start/End: Complemental strand, 31813279 - 31813195
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcata 734  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||| |||| |||||| | ||||| ||||||||||||||    
T  31813279 gcataagttttgtgagactatttgggagaacttatga-aaattgcttatgagattgttcataagccgttttcagcttattttcata 31813195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 738
Target Start/End: Original strand, 9912145 - 9912231
Alignment:
Q  651 ataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||| | |||| ||| ||||||||| ||| ||  |||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  9912145 ataagttttgggcgactgtttcggagaacttatga-aaccagcttatgacattgttcataagctgttttgagcttattttcataagtt 9912231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 735
Target Start/End: Complemental strand, 848117 - 848022
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||| | | |||  ||||||||||||  || ||| || |||| |||||||||||||||    
T  848117 cttatcta-tagcataagttttgtgagactgtttggaagaacttat-aaaaactgcttatgacatttttcttaagcttttttcagcttattttcataa 848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 20368134 - 20368220
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||| ||||||||||||||||||| ||| ||| | ||||||||| || |||||| ||  ||| | ||||||||||||||||    
T  20368134 cataagttttgtaagactatttgggagaacttatga-aaacaacttatgaca-tgttcataagctagtttcaacttattttcataagtt 20368220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Original strand, 9093545 - 9093596
Alignment:
Q  687 aaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||| | |||| ||||||| ||||||||||| ||||||    
T  9093545 aaatagcttatgacattgttaataacctgttttcagcttattttcttaagtt 9093596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 701
Target Start/End: Complemental strand, 30536632 - 30536570
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||||| | || |||||||||||||||| |||||||| |||| ||| |||||||||||||||    
T  30536632 cttatctactggcgtaagttttgtgagactgtttgggaggacttatga-aaatagcttatgaca 30536570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 6963947 - 6963981
Alignment:
Q  336 attggttttaatggatgtttactaaagaaatattt 370  Q
    |||||||||||| ||||||||||||||||||||||    
T  6963947 attggttttaatagatgtttactaaagaaatattt 6963981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 703
Target Start/End: Complemental strand, 24982834 - 24982770
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacatt 703  Q
    |||||||| || |||||||||||||||||| ||| ||||||| | |||| || |||||||||||||    
T  24982834 cttatctactaacataagttttgtgagactgttttggagaacatttgag-aacagcttatgacatt 24982770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 735
Target Start/End: Original strand, 34404679 - 34404762
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    ||||||||||||| || | ||||||||||||| ||| ||||| ||||||||| ||  ||||| ||||||| ||| |||||||||||    
T  34404679 cataagttttgtgtgagtctttgggagaacttatga-aaatatcttatgaca-tgtacataagctgttttcagcatattttcataa 34404762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 637 - 732
Target Start/End: Complemental strand, 1930165 - 1930071
Alignment:
Q  637 acttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttca 732  Q
    ||||||||| |  |||||||||||||| | ||||||||||||||||||| ||| || ||||||||||| |||||| ||||||| ||||||||||||    
T  1930165 acttatctactgacataagttttgtgacattatttgggagaacttgtga-aaacagtttatgacattgttcataagctgttttcagcttattttca 1930071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 738
Target Start/End: Complemental strand, 33808418 - 33808333
Alignment:
Q  652 taagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||| || || | ||||||||||||| ||| ||||||||||||| |||| ||||||  |||||||||||||||||||||||||    
T  33808418 taagttttttgtgattgtttgggagaacttatga-aaatagcttatgatattgttcataagttgtttttagcttattttcataagtt 33808333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 43717887 - 43717977
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttat---gacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||  |||   ||||| |||||||| |||||||||||||| |||||||||||    
T  43717887 cataagttttgtgagactatttgggagaacttatga-aaacagactatgaggacatcgctcataagctgtttttagcttactttcataagtt 43717977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 34898095 - 34898149
Alignment:
Q  315 aagtcgatatgtatgtcttctattggttttaatggatgtttactaaagaaatatt 369  Q
    ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  34898095 aagtcaatatgcatgtcttttattggttttgatggatgtttactaaagaaatatt 34898149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 653 - 734
Target Start/End: Original strand, 32840942 - 32841022
Alignment:
Q  653 aagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcata 734  Q
    |||||||| |||||| ||||||||||||| ||| ||| | |||||||||||| ||||||  |||||| ||||||||||||||    
T  32840942 aagttttgcgagactgtttgggagaacttatga-aaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Original strand, 3536886 - 3536985
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | ||||||| |||||| ||||||| | ||||| ||   ||||| |||||||||||||| ||||||| |||||| ||||||||| |||||||    
T  3536886 cttatctactggcataagctttgtgtgactattcgagagaatttac-agaaacagcttatgacattgttcataaattgttttcagcttatttccataagt 3536984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 18133785 - 18133686
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||  ||||||| ||| |  ||| || || |||| |||||||||||||||||    
T  18133785 cttatctactagtataagttttgtgagactgtttgggagagcttgtga-aatcagcttataacaattttcacaagcttttttcagcttattttcataagt 18133687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 638 - 681
Target Start/End: Complemental strand, 28763497 - 28763454
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaactt 681  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  28763497 cttatctagtaacataagttttgtgagactgtttgggagaactt 28763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 638 - 701
Target Start/End: Original strand, 35534554 - 35534616
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||||| || |||||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  35534554 cttatctactaacataagttttgtgagactgtttgagagaacttgtga-aaacagcttatgaca 35534616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 736
Target Start/End: Original strand, 35643929 - 35644026
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    |||||||| | |||||| |||||||||||| ||||||| ||||| ||| |||||| |||||||| |  |||||| || |||| | ||||||||||||||    
T  35643929 cttatctactggcataatttttgtgagactgtttgggataacttatga-aaatagtttatgacaattttcataagcttttttcaacttattttcataag 35644026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 738
Target Start/End: Complemental strand, 26771383 - 26771295
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||| |  ||| || |  |||| | ||||||||||||||||    
T  26771383 gcataagttttgtgagactgtttgggagaacttatga-aaacagcttatgacaattttcaaaagcctttttcaacttattttcataagtt 26771295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 702
Target Start/End: Complemental strand, 27754520 - 27754469
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacat 702  Q
    |||||||||||||||||||||||||||||||| ||| ||| || |||||||||    
T  27754520 cataagttttgtgagactatttgggagaacttatga-aaacagtttatgacat 27754469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 738
Target Start/End: Complemental strand, 38648468 - 38648381
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||| | ||||||| || |||| ||| || |||||||||||    
T  38648468 cataagttttgtgagactgtttgggagaccttatga-aaacagctcatgacagttctcataagcttttttaagcgtaatttcataagtt 38648381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 736
Target Start/End: Complemental strand, 27028949 - 27028863
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    |||||||||| |||||| | |||||||||| || ||| ||| |||||| ||||||  |||||| || |||| ||||||||||||||||    
T  27028949 gcataagtttagtgagattgtttgggagaaattctga-aaacagcttaggacatttttcataagctattttcagcttattttcataag 27028863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 738
Target Start/End: Complemental strand, 10120859 - 10120786
Alignment:
Q  664 gactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||| |||| |||||||| ||| ||| |||||||||||||  |||||  ||||||| ||||||||||||||||||    
T  10120859 gactgtttgagagaacttatga-aaacagcttatgacatttatcatatgctgttttcagcttattttcataagtt 10120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 703
Target Start/End: Original strand, 1058030 - 1058082
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacatt 703  Q
    |||||||||||||||||| ||||||||||||| ||| |||  ||||||||||||    
T  1058030 cataagttttgtgagactgtttgggagaacttttga-aaactgcttatgacatt 1058082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 675
Target Start/End: Original strand, 9130260 - 9130297
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttggga 675  Q
    |||||||| | |||||||||||||||||||||||||||    
T  9130260 cttatctactggcataagttttgtgagactatttggga 9130297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 736
Target Start/End: Original strand, 31751550 - 31751595
Alignment:
Q  691 agcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    |||||||||||||| |||||| || |||| ||||||||||||||||    
T  31751550 agcttatgacattgttcataagctattttcagcttattttcataag 31751595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 637 - 738
Target Start/End: Original strand, 41981643 - 41981741
Alignment:
Q  637 acttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||| ||| ||| |||  ||||||||| |||||||| |  ||||||||||||||| |||    
T  41981643 acttatctactagcattagttttgtgagactgtttgggagaacttatga-aaacagc--atgacattgttcataaaccgcgtttagcttattttcacaag 41981739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 733
Target Start/End: Complemental strand, 7808636 - 7808540
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcat 733  Q
    ||||| |||| ||||||| ||| | ||||||| ||||||||| ||| ||| ||||||||||| |||||| |||||| ||||||| |||||||||||||    
T  7808636 aacttttctactagcatatgttatttgagactgtttgggagagcttatga-aaatagcttataacattgttcataagctgttttcagcttattttcat 7808540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 9202700 - 9202788
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||| ||||||||| ||| ||||  || |||| |||||||||||||| |||||| ||||||  ||||||||||||||||||    
T  9202700 gcataagttttgtaagactatttcggaaaactaatg-gaaacagcttatgacattgttcataagctgtttccagcttattttcataagtt 9202788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 639 - 735
Target Start/End: Complemental strand, 7985097 - 7985002
Alignment:
Q  639 ttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    ||||||| | ||||||| ||||||||||||||||||||| |||  || ||| ||||| |||| ||| |||||| ||||||| |||||||||||||||    
T  7985097 ttatctactggcataagctttgtgagactatttgggagagcttaaga-aaacagcttgtgacgttgttcataagctgttttcagcttattttcataa 7985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 738
Target Start/End: Complemental strand, 10640070 - 10639983
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||| | | ||||||||||||| ||| ||| |||||||||||||  |||||| || ||| |||||||||||||||||||    
T  10640070 cataagttttgtgatattgtttgggagaacttatga-aaacagcttatgacatttttcataagctttttctagcttattttcataagtt 10639983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 651 - 738
Target Start/End: Complemental strand, 39105581 - 39105494
Alignment:
Q  651 ataagttttgtgagactattt-gggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||| ||||||| ||| ||||||| || ||| ||| |||||||||||||| |||||| || |||||||||||||||||||||||    
T  39105581 ataagttttatgagacttttttgggagaatttatga-aaacagcttatgacattgttcataagctatttttagcttattttcataagtt 39105494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 737
Target Start/End: Original strand, 1464970 - 1465059
Alignment:
Q  647 tagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    ||||||||||| || |||||| || |||||||||| ||| ||| |||||||| ||||||||||||  |||||| |||||||||||| ||||    
T  1464970 tagcataagttctgcgagactgttcgggagaacttatga-aaacagcttatggcattgctcataagttgttttcagcttattttcacaagt 1465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 21134511 - 21134410
Alignment:
Q  254 caaatttttcaccacaattttacaggttctatgtttgtcttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggatgt 353  Q
    |||||||  ||||||||||||| | ||||||||||| |||||||||| ||| | |||  | ||||| ||||||| || || |||||||||| ||||||||    
T  21134511 caaatttagcaccacaattttaaaagttctatgtttctcttgatgcaccaagagactgttcaagtcaatatgtaagtattttattggttttgatggatgt 21134412  T
Q  354 tt 355  Q
    ||    
T  21134411 tt 21134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Original strand, 16937824 - 16937923
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| ||||||||||||||||||| | ||||| ||||||| ||| ||| |||||||||||    |||||| || |||| ||||||||||| |||||    
T  16937824 cttatctactagcataagttttgtgagagtgtttggaagaacttatga-aaacagcttatgacaaatttcataagcttttttcagcttattttcctaagt 16937922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 42100440 - 42100341
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | |||||| ||||||| |||| | || |||||||||||| |||||||||||||||| | ||| ||  |||||| | |||||||||||||||    
T  42100440 cttatctattggcataaattttgtgtgactgtgtgagagaacttgtga-aaatagcttatgacatagttcaaaaggtgttttcatcttattttcataagt 42100342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 691 - 738
Target Start/End: Original strand, 42099865 - 42099912
Alignment:
Q  691 agcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||    
T  42099865 agcttatgacattgttcataagctgtttttggcttattttcataagtt 42099912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 740
Target Start/End: Complemental strand, 8334652 - 8334599
Alignment:
Q  687 aaatagcttatgacattgctcataaactgtttttagcttattttcataagtttt 740  Q
    ||||||||||||||||   ||||||| |||||| ||||||||||||||||||||    
T  8334652 aaatagcttatgacatatttcataaattgttttcagcttattttcataagtttt 8334599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 738
Target Start/End: Original strand, 16457935 - 16458019
Alignment:
Q  653 aagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||||||||||| |  |||||| || |||| || ||||||||| |||||    
T  16457935 aagttttgtgagactgtttgggagaacttatga-aaacagcttatgacagttttcataagctcttttcagtttattttcacaagtt 16458019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 681
Target Start/End: Original strand, 42569555 - 42569596
Alignment:
Q  640 tatctagtagcataagttttgtgagactatttgggagaactt 681  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  42569555 tatctactagcataagttttgtgagactatttgagagaactt 42569596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 738
Target Start/End: Complemental strand, 34160809 - 34160761
Alignment:
Q  690 tagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  34160809 tagcttgtgacactgttcataaactgttttcagcttattttcataagtt 34160761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 719
Target Start/End: Complemental strand, 39248218 - 39248148
Alignment:
Q  647 tagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttt 719  Q
    ||||||||||||||||||||| ||||||||||||| | | ||| |||||||||| ||| |||||| |||||||    
T  39248218 tagcataagttttgtgagactgtttgggagaacttat-aaaaacagcttatgac-ttgttcataagctgtttt 39248148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 735
Target Start/End: Complemental strand, 6096678 - 6096580
Alignment:
Q  636 aacttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataa 735  Q
    |||||||||| | ||||||||||||||||||| || || |||||||  |  ||| ||||| |||||||| |||||| ||||| | |||| ||||||||||    
T  6096678 aacttatctactggcataagttttgtgagacttttaggaagaacttacg-taaacagcttgtgacattgttcataagctgttctcagctcattttcataa 6096580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 736
Target Start/End: Original strand, 17258856 - 17258921
Alignment:
Q  669 tttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataag 736  Q
    ||||||||||| | ||| |||||||||||||||| | |||||| ||||||| ||||||||||||||||    
T  17258856 tttgggagaacctatga-aaatagcttatgacat-gttcataagctgttttcagcttattttcataag 17258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 29284129 - 29284066
Alignment:
Q  293 ttgatgcaacaaaaaactagttaagtcgatatgtatgtcttctattggttttaatggatgttta 356  Q
    ||||||||||||||||||| ||||||| |||  |||||||| ||||| |||| |||||| ||||    
T  29284129 ttgatgcaacaaaaaactatttaagtcaatacttatgtcttttattgattttgatggattttta 29284066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 704
Target Start/End: Complemental strand, 11064783 - 11064730
Alignment:
Q  650 cataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattg 704  Q
    |||||||||||||||| | |||| |||||||| ||| ||||||||||||||||||    
T  11064783 cataagttttgtgagattgtttgagagaacttatga-aaatagcttatgacattg 11064730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 738
Target Start/End: Original strand, 19460330 - 19460426
Alignment:
Q  640 tatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    |||||| | |||||||||| |||||||| ||| ||||||||| || |||| | ||||||| |||  |||||| ||||||  ||||||||||||||||||    
T  19460330 tatctactggcataagtttagtgagactgtttaggagaacttttg-gaaacaacttatgatatttttcataagctgtttc-agcttattttcataagtt 19460426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 32811171 - 32811125
Alignment:
Q  172 ttagtacctcaaatttgcaaaatagcgatttagtctcttaaattgaa 218  Q
    ||||| |||||||||||||||||||  |||||||| |||||||||||    
T  32811171 ttagtccctcaaatttgcaaaatagaaatttagtcccttaaattgaa 32811125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 681
Target Start/End: Original strand, 5721176 - 5721209
Alignment:
Q  648 agcataagttttgtgagactatttgggagaactt 681  Q
    |||||||||||||||||||| |||||||||||||    
T  5721176 agcataagttttgtgagactttttgggagaactt 5721209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 701
Target Start/End: Original strand, 7705941 - 7706001
Alignment:
Q  640 tatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgaca 701  Q
    |||||| |||||||||||||||||  || ||||||||||||| ||| ||| |||||||||||    
T  7705941 tatctactagcataagttttgtgacgctctttgggagaacttatga-aaacagcttatgaca 7706001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 738
Target Start/End: Complemental strand, 11700280 - 11700193
Alignment:
Q  649 gcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagtt 738  Q
    ||||||||||||||||||| |||   ||||||| || |||| | |||||||||||| ||||||| || ||| | ||||||||||||||||    
T  11700280 gcataagttttgtgagactgtttcacagaacttatg-gaaacaacttatgacattgttcataaattg-tttcatcttattttcataagtt 11700193  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 741
Target Start/End: Complemental strand, 22360 - 22258
Alignment:
Q  638 cttatctagtagcataagttttgtgagactatttgggagaacttgtgagaaatagcttatgacattgctcataaactgtttttagcttattttcataagt 737  Q
    |||||||| | |||||||||||||||| || ||  ||| ||||| | ||||| ||||||||||| |  || ||| || |||| |||||||||||||||||    
T  22360 cttatctaatggcataagttttgtgagcctgttccggaaaacttat-agaaacagcttatgacaattttcgtaagcttttttcagcttattttcataagt 22262  T
Q  738 tttc 741  Q
    ||||    
T  22261 tttc 22258  T

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