View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_30 (Length: 446)
Name: NF2324_low_30
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 54324699 - 54324277
Alignment:
| Q |
11 |
cagagaccaaagctgtaaagtcatcatcaagtagtatattgctaggcttaagatcacaatgcacaactttcacaggagaataatggtgcagataacacat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54324699 |
cagagaccaaagctgtaaagtcatcatcaagtagtatattgctaggcttaagatcacaatgcacaactttcacaggagaataatggtgcagataacacat |
54324600 |
T |
|
| Q |
111 |
tccctcagctacatcactacaaatcctcactaattgaatcacatctaacctatgacttaactcatggtttggatcatataggttcctctcaagactacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54324599 |
tccctcagctacatcactacaaatcctcactaattgaatcacatctaacctatgacttaactcatggtttggatcatataggttcctctcaagactacca |
54324500 |
T |
|
| Q |
211 |
tttgacatcagtggaagaacaatagccttaaattcttgtttgttgcaaattgtaatgatccttattaaatttctgtgccttatctttttaaggatttggc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54324499 |
tttgacatcagtggaagaacaatagccttaaattcttgtttgttgcaaattgtaatgatccttattaaatttctgtgccttatctttttaaggatttggc |
54324400 |
T |
|
| Q |
311 |
attcccttctaaagctccatgatatctcattatcttttgttgtatctaatactttcactgctactcttgtattatctaggaagacacctttgtaaactcg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54324399 |
attcccttctaaagctccatgatatctcattatcttttgttgcatctaatactttcactgctactcttgtattatctaggaggacacctttgtaaactcg |
54324300 |
T |
|
| Q |
411 |
tccaaacagacctgaaccgataa |
433 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
54324299 |
tccaaactgacctgaaccgataa |
54324277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University