View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_31 (Length: 444)
Name: NF2324_low_31
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 47296004 - 47296428
Alignment:
| Q |
1 |
gacgggaaaagggttctatcaccctaaatcaaacatgctagtagttatgtaagccatatttgttaatgttattagaagtcggttatgatcaacattactc |
100 |
Q |
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| T |
47296004 |
gacgggaaaagggttctatcaccctaaatcaaatatgctagtagttatgtaagccatatttgttaatgttattagaagtcggttatgatcaacattactc |
47296103 |
T |
|
| Q |
101 |
ggttaaataaattgcaaaacactttattttcactctttctctaaactaaatcaaacctccacgataatactatcatgactagagcgagtaattgatgtgt |
200 |
Q |
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| T |
47296104 |
ggataaataaattgcaaaacactttattttcactctttctctaaactaaatcaaacctctacgataatactatcatgactagagcgagtaattgatgtgt |
47296203 |
T |
|
| Q |
201 |
agtgcgtataaatgttgtaaatacggagatattcaattcgaattctactcattgaagaaaaataaactacaatgatgcgcaaatcataaatacaaaatta |
300 |
Q |
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| T |
47296204 |
agtgcgtgtaaatgttgtaaatacggagatattcaattcgaattctactcattgaagaaaaataaactacaatgatgcacaaatcataaatacaaaatta |
47296303 |
T |
|
| Q |
301 |
aatctaaagaaacaattgttctaatattttgcaatacatcaaagtgagtagtattattgtttgactcacaaatctaactacacaagaaatcaattaatag |
400 |
Q |
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| T |
47296304 |
aatctaaagaaacaattgttctaata-tttgcaatacatcaaagtgagtagtattattgtttgattcacaaatctaactacacaagaaatcaattaatag |
47296402 |
T |
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| Q |
401 |
tttatatacttcagccctacacatta |
426 |
Q |
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| T |
47296403 |
tttatatacttcagccttacacatta |
47296428 |
T |
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