View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_35 (Length: 432)
Name: NF2324_low_35
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_35 |
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| [»] scaffold0209 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 235 - 428
Target Start/End: Complemental strand, 581195 - 581002
Alignment:
| Q |
235 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
334 |
Q |
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| T |
581195 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcaaaaaaa |
581096 |
T |
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| Q |
335 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcatttcactc |
428 |
Q |
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| T |
581095 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactc |
581002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 235 - 428
Target Start/End: Original strand, 591232 - 591425
Alignment:
| Q |
235 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
334 |
Q |
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| T |
591232 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcacaatcaataatgctaacaagaaaagcttcaaaaaaa |
591331 |
T |
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| Q |
335 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcatttcactc |
428 |
Q |
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| T |
591332 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactc |
591425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 581405 - 581259
Alignment:
| Q |
23 |
tgttaaggagtcaagatcatctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
122 |
Q |
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| T |
581405 |
tgttaaggagtcaagatcctctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
581306 |
T |
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| Q |
123 |
cctttcactttaacacaagtaatcaccactccaatcatctgattcac |
169 |
Q |
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| T |
581305 |
cctttcactttaacacaagtaatcaccactccaatcatctgattcac |
581259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 591127 - 591168
Alignment:
| Q |
128 |
cactttaacacaagtaatcaccactccaatcatctgattcac |
169 |
Q |
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| T |
591127 |
cactttaacacaagtaatcaccactccaatcatctgattcac |
591168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 17606 - 17496
Alignment:
| Q |
23 |
tgttaaggagtcaagatcatctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
122 |
Q |
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| T |
17606 |
tgttaaggagtcaagatcctctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
17507 |
T |
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| Q |
123 |
cctttcacttt |
133 |
Q |
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||||||||||| |
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| T |
17506 |
cctttcacttt |
17496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 8222 - 8176
Alignment:
| Q |
23 |
tgttaaggagtcaagatcatctccattttggatctatcctaactcca |
69 |
Q |
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| T |
8222 |
tgttaaggagtcaagatcctttccattttggatctatcctaactcca |
8176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 21676 - 21630
Alignment:
| Q |
23 |
tgttaaggagtcaagatcatctccattttggatctatcctaactcca |
69 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21676 |
tgttaaggagtcaagatcctttccattttggatctatcctaactcca |
21630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 37434696 - 37434629
Alignment:
| Q |
335 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgta |
402 |
Q |
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| T |
37434696 |
gaaatccaagcagtacactgaaacatatcatagtcctattgtttaacagaaagctccctccgcttgta |
37434629 |
T |
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