View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_36 (Length: 428)
Name: NF2324_low_36
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 45402962 - 45402568
Alignment:
| Q |
17 |
atccttctcactaattactattattaataattcatcaagatagtgagttggatagctggaccactacaatctaatgtaacaaagttaatttacagcacca |
116 |
Q |
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| T |
45402962 |
atccttctcactaattactattattaataattcatcaagatagtgagttggatagctggaccactacaatctaatgtaacaaagttaatttacagcacca |
45402863 |
T |
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| Q |
117 |
caaacttaagctcacaataaaattaattaagctcaacctttatattatccctctttgttcgattaaatataatttaggcgatcgagtcggttctcggagg |
216 |
Q |
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| T |
45402862 |
caaacttaagctcacaataaaattaa----gctcaacctttatattatcactctttcttcgattaaatataatttaggcga----gtcggttctcggagg |
45402771 |
T |
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| Q |
217 |
tttactaggatcaagaaaaatattgaaggctcaaagagtatcgacaaagatacttacataatatctactaataaaattgtcacattggaaacgagattga |
316 |
Q |
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| T |
45402770 |
tttactaggatcaagaaaaatattgaaggctcaaagagtatcgataaagatacttgcataatatccactaacaaaattgtcacattggaaacgagattaa |
45402671 |
T |
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| Q |
317 |
aattcaaatccttatgagatatgaattgaatctttaccaacaaaatccctttttcttttctattaaaatgacattaatgttttgacatagtataaagtat |
416 |
Q |
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| T |
45402670 |
aattcaagtccttatgaaatatgagttgaatctttaccacctaaatccctttttcttttctattaaaatgacattaatgttttgacatagtataaagtgt |
45402571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 35809562 - 35809598
Alignment:
| Q |
322 |
aaatccttatgagatatgaattgaatctttaccaaca |
358 |
Q |
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| T |
35809562 |
aaatccttatgagatatgagttgaatccttaccaaca |
35809598 |
T |
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