View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_39 (Length: 413)

Name: NF2324_low_39
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_39
NF2324_low_39
[»] chr8 (16 HSPs)
chr8 (178-311)||(7844707-7844840)
chr8 (18-102)||(1386524-1386608)
chr8 (168-309)||(35070634-35070775)
chr8 (220-306)||(35801008-35801094)
chr8 (222-310)||(10667966-10668054)
chr8 (220-311)||(24191373-24191464)
chr8 (220-311)||(24192692-24192783)
chr8 (220-310)||(32552293-32552383)
chr8 (220-310)||(35799449-35799538)
chr8 (220-310)||(39173113-39173203)
chr8 (220-309)||(32553936-32554025)
chr8 (220-309)||(39174756-39174845)
chr8 (233-307)||(10669487-10669561)
chr8 (252-293)||(32695336-32695377)
chr8 (220-272)||(20180703-20180755)
chr8 (252-296)||(32798593-32798637)
[»] chr4 (17 HSPs)
chr4 (168-309)||(4872208-4872349)
chr4 (220-308)||(19750322-19750410)
chr4 (220-308)||(19789396-19789484)
chr4 (223-311)||(56085343-56085431)
chr4 (220-311)||(23104036-23104127)
chr4 (229-311)||(4871490-4871572)
chr4 (220-309)||(44498458-44498547)
chr4 (220-310)||(45535043-45535133)
chr4 (173-311)||(56086533-56086671)
chr4 (233-311)||(49895036-49895114)
chr4 (252-299)||(24426347-24426394)
chr4 (220-307)||(44500013-44500100)
chr4 (168-311)||(45536450-45536593)
chr4 (252-299)||(27850993-27851040)
chr4 (168-310)||(23102579-23102720)
chr4 (252-296)||(1794422-1794466)
chr4 (252-296)||(6349614-6349658)
[»] chr3 (15 HSPs)
chr3 (178-311)||(48084941-48085073)
chr3 (168-309)||(44601647-44601788)
chr3 (220-311)||(53194640-53194731)
chr3 (168-310)||(53193093-53193230)
chr3 (237-310)||(10301864-10301937)
chr3 (223-311)||(7270319-7270407)
chr3 (237-310)||(10340015-10340088)
chr3 (240-311)||(7271642-7271713)
chr3 (224-311)||(54110316-54110403)
chr3 (233-306)||(46368809-46368882)
chr3 (233-306)||(54108540-54108613)
chr3 (222-308)||(10338736-10338823)
chr3 (220-311)||(44603071-44603162)
chr3 (237-310)||(10300936-10301010)
chr3 (252-299)||(53624422-53624469)
[»] chr2 (3 HSPs)
chr2 (220-311)||(23233725-23233816)
chr2 (221-309)||(23231538-23231626)
chr2 (313-390)||(40618613-40618687)
[»] chr7 (17 HSPs)
chr7 (145-309)||(48312607-48312771)
chr7 (220-310)||(9081390-9081480)
chr7 (220-309)||(44372727-44372816)
chr7 (220-309)||(44381583-44381672)
chr7 (234-311)||(3330688-3330765)
chr7 (21-78)||(40660776-40660833)
chr7 (220-311)||(44376717-44376808)
chr7 (220-311)||(44385584-44385675)
chr7 (233-311)||(48312020-48312098)
chr7 (220-296)||(29589299-29589375)
chr7 (222-306)||(3332188-3332272)
chr7 (252-299)||(47456436-47456483)
chr7 (253-299)||(40811348-40811394)
chr7 (25-70)||(18195093-18195138)
chr7 (258-299)||(32256462-32256503)
chr7 (84-117)||(48312549-48312582)
chr7 (233-309)||(16755869-16755945)
[»] chr1 (13 HSPs)
chr1 (222-309)||(6049455-6049542)
chr1 (222-311)||(3615243-3615332)
chr1 (222-311)||(3617528-3617617)
chr1 (173-310)||(27557673-27557810)
chr1 (220-311)||(27556266-27556357)
chr1 (220-310)||(6047916-6048005)
chr1 (237-307)||(9226261-9226331)
chr1 (252-299)||(45585070-45585117)
chr1 (252-299)||(52627523-52627570)
chr1 (233-307)||(17190553-17190627)
chr1 (18-84)||(38068655-38068721)
chr1 (222-307)||(52076531-52076616)
chr1 (233-310)||(52078136-52078213)
[»] chr6 (3 HSPs)
chr6 (220-311)||(18242339-18242429)
chr6 (220-311)||(18240396-18240487)
chr6 (233-303)||(11724768-11724838)
[»] chr5 (4 HSPs)
chr5 (220-307)||(9220489-9220576)
chr5 (18-83)||(16125767-16125832)
chr5 (18-70)||(8586957-8587009)
chr5 (362-390)||(16125682-16125710)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 7844840 - 7844707
Alignment:
Q  178 ttacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaa 277  Q
    |||||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||| || |||||||||||||||| | |    
T  7844840 ttacttatttgacggaaatgacatttttgaaatttgtttcagaagttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaactggta 7844741  T
Q  278 aatagttgagggaccattggattaatttagccta 311  Q
    | ||||| ||||||||||||||||||||| ||||    
T  7844740 attagttaagggaccattggattaatttaaccta 7844707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1386524 - 1386608
Alignment:
Q  18 gtttggttggcctgtctttaggtcatttgaaaagaacgtaattcgagaattttaaacaacacaatgtttgttgttgttgtcacgt 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1386524 gtttggttggcctgtctttgggtcatttgaaaagaacgtaatttgagaattttaaacaacacaatgtttgttgttgttgtcacgt 1386608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 35070634 - 35070775
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    |||| ||||||||||| ||| ||| ||| ||  ||||| ||||||||||| |||||||||  || ||||||||||||||||||||| |  ||||||||||    
T  35070634 aacgtcacaattacttttttaacggaaaggatctttttgaaatttgtttcagaagttgaggaaccaaaatgatgattttaagacttatatgaccaaaatg 35070733  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||| | || ||  ||| |||||||| |||||||||||||    
T  35070734 aaaactggtaattaactgaaggaccatttgattaatttagcc 35070775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 35801008 - 35801094
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaattta 306  Q
    |||||||| ||||||||||| ||||||||||||| |  |||||||||||||||| | || |||||||||||||||| ||||||||||    
T  35801008 aagttgagggactaaaatgacgattttaagacttataggaccaaaatgaaaactcgtaattagttgagggaccatttgattaattta 35801094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 10668054 - 10667966
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||| ||| |||||| ||||||||| | || || |||||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  10668054 gttgagggaccaaaatgctgattttaaaatttatgggaccaaaatgaaaactcgaaattagttgagggaccatttgattaatttagcct 10667966  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 24191464 - 24191373
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| |||||| |||||||||||||||||| || || |||||||| ||||||| |||| ||||||||||| |||| |||||||||| ||||    
T  24191464 aagttaagagaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattagttgagggatcatttgattaatttaaccta 24191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 24192692 - 24192783
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||||||| |||||||||||||||||| || || |||||||| ||||||| |||| || |||||||||||||  ||||||||| ||||    
T  24192692 aagttgagagaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattaattgagggaccatttaattaatttaaccta 24192783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 32552383 - 32552293
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||| ||||||| ||||||||||||| |  || ||||||||||||| | || |||||||||||||||| ||||||||||||||    
T  32552383 aagttgagggaccaaaatgacgattttaagacttataggatcaaaatgaaaactcgtaattagttgagggaccattagattaatttagcct 32552293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 35799538 - 35799449
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||| |||||||| |||||||||||| | ||||||||||||||||| | || ||||||| |||||||| ||||||||||||||    
T  35799538 aagttgagggaccaaaatgataattttaagacttataagaccaaaatgaaaacttgtaattagttga-ggaccatttgattaatttagcct 35799449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 39173203 - 39173113
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||| ||||||| ||||||||||||| |  |||||||||||||||| | || || ||||||||||||| ||||||||||||||    
T  39173203 aagttgagggaccaaaatgacgattttaagacttataggaccaaaatgaaaactcgtaattaattgagggaccatttgattaatttagcct 39173113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 32553936 - 32554025
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||||| ||| ||||||| ||||||||||||| |  || ||||||||||||| | || |||||||||||||||| |||||||||||||    
T  32553936 aagttgagggaccaaaatgacgattttaagacttataggatcaaaatgaaaactcgtaattagttgagggaccatttgattaatttagcc 32554025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 39174756 - 39174845
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||||| ||| |||||||||||||||| |||| |  ||||||||||||||||   || |||||||||||||||| |||||||||||||    
T  39174756 aagttgagggaccaaaatgatgattttaaaacttataggaccaaaatgaaaacttataattagttgagggaccatttgattaatttagcc 39174845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 10669487 - 10669561
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    |||||| ||||||||||| || || ||||||||||||||||  ||| |||||||||||| |||||||||||||||    
T  10669487 aaaatgttgattttaagatttatgggaccaaaatgaaaactcaaaattagttgagggactattggattaatttag 10669561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 32695336 - 32695377
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggacca 293  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  32695336 ttgtgagaccaaaatgaaaacttgaaattatttgagggacca 32695377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 20180703 - 20180755
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaac 272  Q
    |||| ||| ||| |||||||| ||||||||| || ||||||||||||||||||    
T  20180703 aagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 32798593 - 32798637
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattg 296  Q
    ||||| |||||||||||||||| |||| || ||||||||||||||    
T  32798593 ttgtgggaccaaaatgaaaacttgaaattatttgagggaccattg 32798637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 4872208 - 4872349
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    ||||||||| |||||||||||||| ||| |||| |||| ||||||||||| ||||||||| ||| ||| ||||||||||||||||| || ||||||||||    
T  4872208 aacgacacagttacttatttgacggaaaggacgattttgaaatttgtttcagaagttgagggaccaaattgatgattttaagacttatgggaccaaaatg 4872307  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    ||||||   || ||||||||||||||||||||||||||||||    
T  4872308 aaaactgagaattagttgagggaccattggattaatttagcc 4872349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 19750322 - 19750410
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagc 308  Q
    |||||||  |||||||||||||||||||| |||| || || ||||||||||||||| || |||||||||||||||||||||||||||||    
T  19750322 aagttgaaggactaaaatgatgattttaaaacttatgggatcaaaatgaaaactagtaattagttgagggaccattggattaatttagc 19750410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 19789484 - 19789396
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagc 308  Q
    |||||||  |||||||||||||||||||| |||| || || ||||||||||||||| || |||||||||||||||||||||||||||||    
T  19789484 aagttgaaggactaaaatgatgattttaaaacttatgggatcaaaatgaaaactagtaattagttgagggaccattggattaatttagc 19789396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 56085431 - 56085343
Alignment:
Q  223 ttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| | || ||||||| |||||||| |||||||||||||||    
T  56085431 ttgagggaccaaaatgatgattttaagacttatgagaccaaaatgaaaactggtaattagttgatggaccatttgattaatttagccta 56085343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 23104036 - 23104127
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||||  | ||||||||||||||||| |||||||||||||||||||   || |||||||||||||||| |||||||||||||||    
T  23104036 aagttgagggactcgattgatgattttaagacttatgagaccaaaatgaaaactgagaattagttgagggaccatttgattaatttagccta 23104127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 4871572 - 4871490
Alignment:
Q  229 gactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| | | || |||||||||| |||||| ||||||||||||||    
T  4871572 gactaaattgatgattttaagacttatgagaccaaaatgaaaattgggaattagttgaggggccattgaattaatttagccta 4871490  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 44498547 - 44498458
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||||| ||| |||||||||||||||||| || || |||||||| ||||||| |||| || |||||||||||||  ||||||||||||    
T  44498547 aagttgagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattaattgagggaccatttcattaatttagcc 44498458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 45535133 - 45535043
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||||  | ||||||||||||||||| || ||||||||||||||||   || |||||||||||| ||| ||||||||||||||    
T  45535133 aagttgagggactcgattgatgattttaagacttatgggaccaaaatgaaaactgagaattagttgagggactatttgattaatttagcct 45535043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 56086533 - 56086671
Alignment:
Q  173 cacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaac 272  Q
    ||||||||||| ||||||| ||| ||  ||||| ||||||||||  |||||||||  || |||||||| |||||||||||| |  ||||||||||||||     
T  56086533 cacaattacttttttgacggaaaggatctttttgaaatttgttttagaagttgaggaaccaaaatgataattttaagacttataggaccaaaatgaaaat 56086632  T
Q  273 tagaaaatagttgagggaccattggattaatttagccta 311  Q
    | | || ||| |||  |||||||  ||||||||||||||    
T  56086633 tggtaattagctgaatgaccatttaattaatttagccta 56086671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 49895114 - 49895036
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||| ||  |||| || |||||||||||||||| | || |||||||||||||||| |||||||||||||||    
T  49895114 aaaatgataattatagaacttatgggaccaaaatgaaaactggtaattagttgagggaccatttgattaatttagccta 49895036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 24426394 - 24426347
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||    
T  24426394 ttgtgagaccaaaatgaaaacttgaaattatttgagggaccattggat 24426347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 44500013 - 44500100
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    ||||| || ||| |||||||||||||||||| || || |||||||| ||||||| |||| || ||||||||| |||  ||||||||||    
T  44500013 aagttaagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattaattgagggacaatttcattaatttag 44500100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 45536450 - 45536593
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    |||| |||| ||||||||| |||| ||| ||||||||| || | |||||| ||| ||||| |||   | ||||||||||||||||| || |||||||| |    
T  45536450 aacggcacagttacttattcgacggaaaggacgtttttgaattctgtttcagaaattgagggacccgattgatgattttaagacttatgggaccaaaacg 45536549  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| |  || ||||| ||||||||   | |||||||||||||    
T  45536550 aaaacgaagaattagttaagggaccaaaaggttaatttagccta 45536593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 27850993 - 27851040
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    ||||| |||||||||||||||| |||| || |||||||||||||||||    
T  27850993 ttgtgggaccaaaatgaaaacttgaaattatttgagggaccattggat 27851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 310
Target Start/End: Complemental strand, 23102720 - 23102579
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    |||| |||| |||||||||  ||| ||| ||||||||| || |||||||| ||| ||||| |||   | ||||||||||||||||| || |||||||| |    
T  23102720 aacggcacagttacttattc-acggaaaggacgtttttgaattttgtttcagaaattgagggacccgattgatgattttaagacttatgggaccaaaacg 23102622  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    ||||| |  || ||||| ||||||||   | ||||||||||||    
T  23102621 aaaacgaagaattagttaagggaccaaaaggttaatttagcct 23102579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 1794466 - 1794422
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattg 296  Q
    |||||||| ||||||||||||| |||| || ||||||||||||||    
T  1794466 ttgtgagatcaaaatgaaaacttgaaattatttgagggaccattg 1794422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 6349614 - 6349658
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattg 296  Q
    ||||| |||||||||||||||| |||| || ||||||||||||||    
T  6349614 ttgtgggaccaaaatgaaaacttgaaattatttgagggaccattg 6349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 48084941 - 48085073
Alignment:
Q  178 ttacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaa 277  Q
    |||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||  ||||||||||| ||||||   |    
T  48084941 ttacttatttgacggaaaggacgtttttgaaatttgtttcagaagttgag-gaccaaaatgatgattttaagacttaagagaccaaaataaaaactgaga 48085039  T
Q  278 aatagttgagggaccattggattaatttagccta 311  Q
    | |||||||||||||||| |||||||||||||||    
T  48085040 attagttgagggaccatttgattaatttagccta 48085073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 168 - 309
Target Start/End: Complemental strand, 44601788 - 44601647
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    |||| |||| |||||||||||||| ||||||||||||| || |||||||| ||| ||||| |||   | ||||||||||||||||| |||||| ||||||    
T  44601788 aacggcacagttacttatttgacggaaatgacgtttttgaattttgtttcagaaattgagggacccgattgatgattttaagacttatgagactaaaatg 44601689  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    ||||||   || |||||||||||||||| |||||||||||||    
T  44601688 aaaactgagaattagttgagggaccatttgattaatttagcc 44601647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 53194640 - 53194731
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||  ||| |||||||||||||||| |||| ||  ||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  53194640 aagttgaaggaccaaaatgatgattttaaaacttatggaaccaaaatgaaaactggtaattagttgagggaccattggattaatttagccta 53194731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 310
Target Start/End: Complemental strand, 53193230 - 53193093
Alignment:
Q  168 aacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatg 267  Q
    ||||||| | |||||||||||||| |||||| |||||| |||||||||||  |||||||  ||| |||||||||||||| ||||      | |||||||     
T  53193230 aacgacatagttacttatttgacggaaatgatgtttttaaaatttgtttcaaaagttgaaggaccaaaatgatgatttttagac-----gggccaaaata 53193136  T
Q  268 aaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||| | || ||||||||||||||| |||||||||||||||    
T  53193135 aaaactggtaattagttgagggaccatcggattaatttagcct 53193093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 10301864 - 10301937
Alignment:
Q  237 tgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    ||||||||||||||||| || |||||||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  10301864 tgatgattttaagacttatgggaccaaaatgaaaaatggaaattagttgagggaccattgaattaatttagcct 10301937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 7270407 - 7270319
Alignment:
Q  223 ttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| ||| |||||| |||||||||||||| || ||| |||||||||||| |||| ||||||||||| |||| |||||||||||||||    
T  7270407 ttgagggaccaaaatgttgattttaagacttatgggacaaaaatgaaaactggaaattagttgagggatcatttgattaatttagccta 7270319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 10340015 - 10340088
Alignment:
Q  237 tgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    ||||||||||||||  | ||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  10340015 tgatgattttaagaaatatgagaccaaaatgaaaaatggaaattagttgagggaccattgaattaatttagcct 10340088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 7271642 - 7271713
Alignment:
Q  240 tgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||||||| |||| |||||  ||||| |||| | |||| ||||||||||||||||||||||||||||||||    
T  7271642 tgattttaaaacttatgagattaaaataaaaattggaaattagttgagggaccattggattaatttagccta 7271713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 54110316 - 54110403
Alignment:
Q  224 tgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||| ||||||||||||||||||||||||| ||||||||||  ||||| |   || || ||||||||||||| ||||||| |||||||    
T  54110316 tgagggactaaaatgatgattttaagacttatgagaccaaagcgaaaattgagaattaattgagggaccatttgattaatatagccta 54110403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 46368882 - 46368809
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaattta 306  Q
    ||||||||||||||||| ||| ||||||||||||||| |||   || ||| |||||||||||| ||||||||||    
T  46368882 aaaatgatgattttaagccttatgagaccaaaatgaatacttataattagctgagggaccatttgattaattta 46368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 54108613 - 54108540
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaattta 306  Q
    |||||||| |||||||||||| || |||||||| |||||||   || |||||||||||||||||| ||||||||    
T  54108613 aaaatgataattttaagacttatgggaccaaaacgaaaactgagaattagttgagggaccattgggttaattta 54108540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 10338823 - 10338736
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaa-tagttgagggaccattggattaatttagc 308  Q
    |||||| ||| |||||||||||||||| | || || ||||||||||||||||| |||| || || ||||||||||| |||| ||||||    
T  10338823 gttgagggaccaaaatgatgattttaaaatttatgggaccaaaatgaaaactaaaaaattaattaagggaccattgaattattttagc 10338736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 44603071 - 44603162
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||||  | |||| ||||||||| || || ||||||||| ||||||  ||| ||||||||||||||||  ||||||||||||||    
T  44603071 aagttgagggactcgattgattattttaagatttatgggaccaaaataaaaactgaaaattagttgagggaccatttaattaatttagccta 44603162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 10301010 - 10300936
Alignment:
Q  237 tgatgattttaagacttgtgagaccaaaatgaaaactagaaaat-agttgagggaccattggattaatttagcct 310  Q
    |||||||||||||| || ||  |||||||||||||||  ||||| |||| ||||||||||| |||||||||||||    
T  10301010 tgatgattttaagatttatggaaccaaaatgaaaactgaaaaattagttaagggaccattgaattaatttagcct 10300936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 53624422 - 53624469
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    |||||||| ||||||||||||| |||| || |||||||||||||||||    
T  53624422 ttgtgagatcaaaatgaaaacttgaaattatttgagggaccattggat 53624469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 23233725 - 23233816
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||| ||||||||||||||||||||| || |||||||||||||| | | || |||||||||||||||| |||||||||||||||    
T  23233725 aagttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaatttgtaattagttgagggaccatttgattaatttagccta 23233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 23231626 - 23231538
Alignment:
Q  221 agttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    ||||||| ||| ||||||||||||||||||||| || ||||||||| |||||| | || |||||||||||||||| |||||||||||||    
T  23231626 agttgagggaccaaaatgatgattttaagacttatgggaccaaaataaaaactcgtaattagttgagggaccatttgattaatttagcc 23231538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 40618687 - 40618613
Alignment:
Q  313 ttaaacttcattcttggtggtggctgaaggcgaattataaactggatttttcttttgattttcatatttggtggtctt 390  Q
    |||| ||||||| || ||||||||||||||||| |   || ||||||||||||||||||| |||||||||||||||||    
T  40618687 ttaagcttcattttttgtggtggctgaaggcgagt---aagctggatttttcttttgattgtcatatttggtggtctt 40618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 48312607 - 48312771
Alignment:
Q  145 aaattaaaaaatggaacagaattaacgacacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgatt 244  Q
    |||| ||||||||||||| || ||||| ||||||||  ||||||||| ||| |||  |||| ||||| |||    ||| | |||||| ||||||||||||    
T  48312607 aaatgaaaaaatggaacaaaagtaacggcacaattaactatttgacggaaaggacacttttgaaattcgttagtaaagataagagaccaaaatgatgatt 48312706  T
Q  245 ttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||| || || ||||||||||||||||   || |||||||| ||||||| |||||||||||||    
T  48312707 ttaagatttatgggaccaaaatgaaaactgtgaattagttgagagaccatttgattaatttagcc 48312771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 9081480 - 9081390
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||  ||| ||||||||||| ||||| || |||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  9081480 aagttgagggagcaaattgatgattttatgacttatgggaccaaaatgaaaaccggaaattagttgagggaccattggattaatttagcct 9081390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 44372816 - 44372727
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||| ||| ||| |||||||| ||||||||| || ||||||||||||||||||| |||| |||||||||||||||| || ||||||||||    
T  44372816 aagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaattagttgagggaccatttgactaatttagcc 44372727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 44381672 - 44381583
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||| ||| ||| |||||||| ||||||||| || ||||||||||||||||||| |||| |||||||||||||||| || ||||||||||    
T  44381672 aagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaattagttgagggaccatttgactaatttagcc 44381583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 3330765 - 3330688
Alignment:
Q  234 aaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| ||||||||||||||  ||||||||||||||||   |||| |||||||||||||||| |||||||||||||||    
T  3330765 aaatggtgattttaagacttaagagaccaaaatgaaaatgggaaattagttgagggaccatttgattaatttagccta 3330688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 40660776 - 40660833
Alignment:
Q  21 tggttggcctgtctttaggtcatttgaaaagaacgtaattcgagaattttaaacaaca 78  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  40660776 tggttggcctatctttaggtcatttgaaaagaacgtaattaaagaattttgaacaaca 40660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 44376717 - 44376808
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| || ||| |||||||||||||||| | || || ||||||||  |||| | |||| |||||||||||||||| |||||||||||||||    
T  44376717 aagttaagggaccaaaatgatgattttaaaagttatgggaccaaaacaaaaattcgaaattagttgagggaccatttgattaatttagccta 44376808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 44385584 - 44385675
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    ||||| || ||| |||||||||||||||| | || || ||||||||  |||| | |||| |||||||||||||||| |||||||||||||||    
T  44385584 aagttaagggaccaaaatgatgattttaaaagttatgggaccaaaacaaaaattcgaaattagttgagggaccatttgattaatttagccta 44385675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 48312098 - 48312020
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||||||||||||| || || || |||||||| ||||  ||| |||||||||||||||| ||||||| |||||||    
T  48312098 aaaatgatgattttaagatttatgggatcaaaatgagaactgaaaattagttgagggaccattagattaatgtagccta 48312020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 29589299 - 29589375
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattg 296  Q
    |||||||| ||  ||||||||||||||||||||| |  |||||||||||||||| | || |||||||||||| ||||    
T  29589299 aagttgagggagcaaaatgatgattttaagacttattggaccaaaatgaaaactgggaattagttgagggactattg 29589375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 3332188 - 3332272
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaattta 306  Q
    |||||| ||| ||| |||||||||||  | || || ||||||||||||||||   || |||||||||||||||| ||||||||||    
T  3332188 gttgagggaccaaattgatgattttagaatttatgggaccaaaatgaaaactgttaattagttgagggaccatttgattaattta 3332272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 47456436 - 47456483
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    ||||| |||||||||||||||| |||| || |||||||||||||||||    
T  47456436 ttgtgggaccaaaatgaaaacttgaaattatttgagggaccattggat 47456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 40811394 - 40811348
Alignment:
Q  253 tgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    |||| |||||||||||||||| |||| || |||||||||||||||||    
T  40811394 tgtgggaccaaaatgaaaacttgaaattatttgagggaccattggat 40811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 18195138 - 18195093
Alignment:
Q  25 tggcctgtctttaggtcatttgaaaagaacgtaattcgagaatttt 70  Q
    |||| ||||||| ||||||||||||||||||||||| || ||||||    
T  18195138 tggcttgtctttgggtcatttgaaaagaacgtaatttgataatttt 18195093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 32256462 - 32256503
Alignment:
Q  258 gaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    |||||||||||||||| |||| || |||||||||||||||||    
T  32256462 gaccaaaatgaaaacttgaaattatttgagggaccattggat 32256503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 48312549 - 48312582
Alignment:
Q  84 tttgttgttgttgtcacgtgagagagaataagag 117  Q
    |||||||||||||||||||||||||||| |||||    
T  48312549 tttgttgttgttgtcacgtgagagagaagaagag 48312582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 16755945 - 16755869
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||||||||||| | |||| || ||||||||  ||||||   || ||||||||||||||||  ||||||||||||    
T  16755945 aaaatgatgatttttaaacttatgggaccaaaacaaaaactgagaattagttgagggaccattaaattaatttagcc 16755869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 6049455 - 6049542
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcc 309  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||| | || |||||||||||||||| |||||||||||||    
T  6049455 gttgagggaccaaaatgatgattttaggacttatgagaccaaaataaaaactggtaattagttgagggaccatttgattaatttagcc 6049542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 3615332 - 3615243
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||| ||| |||||||||||||| | |||| || |||||||| |||| ||   || |||||||||||||||| |||||||||||||||    
T  3615332 gttgagggaccaaaatgatgatttttatacttatgggaccaaaacgaaatctgagaattagttgagggaccatttgattaatttagccta 3615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 3617528 - 3617617
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||| ||| |||||||||||||| | |||| || |||||||| |||||||   || ||||||||| ||| ||||||||||||||||||    
T  3617528 gttgagggaccaaaatgatgatttttaaacttatgggaccaaaacgaaaactgagaattagttgaggaaccgttggattaatttagccta 3617617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 27557673 - 27557810
Alignment:
Q  173 cacaattacttatttgacgaaaatgacgttttttaaatttgtttcggaagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaac 272  Q
    |||| |||||||||||||| ||| ||||||||| || |||||||  ||| ||||| |||   | ||||||||||||||||| || |||||||| ||||||    
T  27557673 cacagttacttatttgacggaaaggacgtttttgaattttgtttaagaaattgagggacccgattgatgattttaagacttatgggaccaaaacgaaaac 27557772  T
Q  273 tagaaaatagttgagggaccattggattaatttagcct 310  Q
     |  || ||||| ||||||||   | ||||||||||||    
T  27557773 gaagaattagttaagggaccaaaaggttaatttagcct 27557810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 27556357 - 27556266
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||||  | ||||||||||||||||| || ||||||||| ||||||   || ||||| ||||||||||  ||||||||||||||    
T  27556357 aagttgagggactcgattgatgattttaagacttatgggaccaaaataaaaactgagaattagttaagggaccatttaattaatttagccta 27556266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 6048005 - 6047916
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||| ||| |||||||| ||| || ||||| || ||||||||| |||||| | || ||||||||||| |||| ||||||||||||||    
T  6048005 aagttgag-gaccaaaatgataattataggacttatgggaccaaaattaaaactggtaattagttgagggatcatttgattaatttagcct 6047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 9226261 - 9226331
Alignment:
Q  237 tgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    |||||||||||| | || || ||||||||||||||||   || ||||||||||||||||| ||||||||||    
T  9226261 tgatgattttaaaatttatgggaccaaaatgaaaactgagaattagttgagggaccattgaattaatttag 9226331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 45585070 - 45585117
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    |||||||||||||||||||||| |||| || ||||||||| |||||||    
T  45585070 ttgtgagaccaaaatgaaaacttgaaattatttgagggactattggat 45585117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 52627570 - 52627523
Alignment:
Q  252 ttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggat 299  Q
    ||||| |||||||||||||||| |||| || |||||||||||||||||    
T  52627570 ttgtgggaccaaaatgaaaacttgaaattatttgagggaccattggat 52627523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 17190627 - 17190553
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    |||||||||||||||| |||| |  || |||||||||||||  ||| ||||||| |||| ||| |||||||||||    
T  17190627 aaaatgatgattttaaaacttataggatcaaaatgaaaactgaaaattagttgaaggacaatttgattaatttag 17190553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 38068721 - 38068655
Alignment:
Q  18 gtttggttggcctgtctttaggtcatttgaaaagaacgtaattcgagaattttaaacaacacaatgt 84  Q
    ||||||||| | ||||||||||  ||||||||||||||   || |||||||||||| ||||||||||    
T  38068721 gtttggttgacatgtctttaggcgatttgaaaagaacgcggtttgagaattttaaaaaacacaatgt 38068655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 52076616 - 52076531
Alignment:
Q  222 gttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    |||||| ||| ||||||||||||||  ||||  || |||||||| |||||||   || ||||||||||| |||| |||||||||||    
T  52076616 gttgagggaccaaaatgatgatttttggactaatgggaccaaaacgaaaactgagaattagttgagggatcatttgattaatttag 52076531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 52078136 - 52078213
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagcct 310  Q
    |||||||||||||| | |||| || |||||||| ||||| |   || |||||||||||| ||| ||||||||||||||    
T  52078136 aaaatgatgatttttaaacttatgggaccaaaaagaaaattgagaattagttgagggactattagattaatttagcct 52078213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 18242339 - 18242429
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||| ||| ||||||||||||||||| || ||||| ||| |||| || ||| |||||||||||||||||| |||||||||||||    
T  18242339 aagttgagggaccaaattgatgattttaagacttatgggaccagaataaaaattaaaaattagttgagggaccattgg-ttaatttagccta 18242429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 18240487 - 18240396
Alignment:
Q  220 aagttgagagactaaaatgatgatttt-aagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttagccta 311  Q
    |||||||| ||| ||| |||||||||| ||||| | || || |||||||||||||  ||| ||||||||| ||| ||||||||||||||||||    
T  18240487 aagttgagggaccaaattgatgatttttaagacatatgggatcaaaatgaaaactgaaaattagttgagg-accgttggattaatttagccta 18240396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 11724768 - 11724838
Alignment:
Q  233 aaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaat 303  Q
    |||||||||||||| ||||||   |||||||||| ||||||  ||| ||||||| ||||||||| ||||||    
T  11724768 aaaatgatgatttttagacttactagaccaaaattaaaactgaaaattagttgatggaccattgtattaat 11724838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 9220489 - 9220576
Alignment:
Q  220 aagttgagagactaaaatgatgattttaagacttgtgagaccaaaatgaaaactagaaaatagttgagggaccattggattaatttag 307  Q
    |||||||| ||| |||||  |||||| ||||||| || || ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  9220489 aagttgagggaccaaaattctgatttcaagacttatgggaacaaaatgaaaactggaaattagttgagggaccattgaattaatttag 9220576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 16125832 - 16125767
Alignment:
Q  18 gtttggttggcctgtctttaggtcatttgaaaagaacgtaattcgagaattttaaacaacacaatg 83  Q
    |||||||||||||||||||  |||||||  |||||||||||||||||| |||| || |||||||||    
T  16125832 gtttggttggcctgtctttgtgtcatttcgaaagaacgtaattcgagagttttcaataacacaatg 16125767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 8587009 - 8586957
Alignment:
Q  18 gtttggttggcctgtctttaggtcatttgaaaagaacgtaattcgagaatttt 70  Q
    ||||||||||||||||||| |||||| ||||| ||  ||| ||||||||||||    
T  8587009 gtttggttggcctgtctttgggtcatatgaaaggagtgtagttcgagaatttt 8586957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 390
Target Start/End: Complemental strand, 16125710 - 16125682
Alignment:
Q  362 ttcttttgattttcatatttggtggtctt 390  Q
    |||||||||||||||||||||||||||||    
T  16125710 ttcttttgattttcatatttggtggtctt 16125682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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