View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_4 (Length: 794)

Name: NF2324_low_4
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_4
NF2324_low_4
[»] chr6 (10 HSPs)
chr6 (164-551)||(1235978-1236355)
chr6 (567-789)||(1236346-1236568)
chr6 (18-167)||(1235782-1235946)
chr6 (565-700)||(1183239-1183373)
chr6 (296-361)||(1233304-1233369)
chr6 (590-654)||(1194126-1194190)
chr6 (715-777)||(1183182-1183244)
chr6 (693-750)||(1194054-1194111)
chr6 (99-147)||(1233137-1233185)
chr6 (176-216)||(1233262-1233302)
[»] scaffold0302 (1 HSPs)
scaffold0302 (561-776)||(20346-20565)
[»] chr7 (1 HSPs)
chr7 (561-632)||(20256439-20256510)
[»] chr4 (1 HSPs)
chr4 (561-667)||(12857370-12857476)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 164 - 551
Target Start/End: Original strand, 1235978 - 1236355
Alignment:
Q  164 ataagattattgagttcaattatgagtgaatata----gttataaagctaccatatagtgtattcattgataaagtgttttttatgacgcaattcattta 259  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||             ||||||    
T  1235978 ataagattattgagttcaattatgagtgaatatatatagttataaagctaccatatagtgtattcattgataaagtgtttt-------------cattta 1236064  T
Q  260 tagatttttggtacctatatcannnnnnnnnattacatgttatgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtc 359  Q
    |||||| |||||||||||||||         |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1236065 tagattgttggtacctatatcatttttttttattacatgttatgaatactt-ggtggatgtgaacgtgtcttcatttttatcttcatcaatagaatggtc 1236163  T
Q  360 ttccaacttctatgttcatcttaatcattgaaattagtggaacactaatgacattatcttaattagaccattaatatacctgtattttattagttctgtc 459  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236164 ttccaacttctatgtgcatcttaatcattgaaattagtggaacactaatgacattatcttaattagaccattaatatacctgtattttattagttctgtc 1236263  T
Q  460 ctataaataggactcttgtaagaatgtacaaagaacttagtatttctaacttggtatttctaagttgttgttaaacttgatcgacaataaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236264 ctataaataggactcttgtaagaatgtacaaagaacttagtatttctaacttggtatttctaagttgttgttaaacttgatcgacaataaca 1236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 567 - 789
Target Start/End: Original strand, 1236346 - 1236568
Alignment:
Q  567 gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacactaaa 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1236346 gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccccgacacactaaa 1236445  T
Q  667 aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc 766  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236446 aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc 1236545  T
Q  767 aattgtcatccatctgtgctcct 789  Q
    |||||||||||||||||| ||||    
T  1236546 aattgtcatccatctgtgatcct 1236568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 1235782 - 1235946
Alignment:
Q  18 ctttatacatagaaaaacattgagtttgtcatatttaaccactattatattggtctaaattcatgtttctaataatt---------------aaactttt 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||    
T  1235782 ctttatacatagaaaaacattgggtttgtcatatttaaccactattatattggtctaaattcatgtttctaataattaaacttcgagaggaaaaactttt 1235881  T
Q  103 tcatcggattatagaaaatatcttatgaggggaaattgattgatgcgcgagtctctcaacaataa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235882 tcatcggattatagaaaatatcttatgaggggaaattgattgatgcgcgagtctctcaacaataa 1235946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 565 - 700
Target Start/End: Complemental strand, 1183373 - 1183239
Alignment:
Q  565 aagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacacta 664  Q
    |||||||| ||||||||  || |  ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||  ||||||    
T  1183373 aagacaatcacacatgacagatgcaaaaatatcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaact-ccctcgacacta 1183275  T
Q  665 aaaacacacccaacagcaacacaaagctcgcaaaaa 700  Q
    ||||||||  |||||||||||  |||| ||||||||    
T  1183274 aaaacacattcaacagcaacatgaagcgcgcaaaaa 1183239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 1233304 - 1233369
Alignment:
Q  296 atgttatgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtctt 361  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  1233304 atgttatgaatactttggtggatgtgaatgtgtcctcatgtttatcttcttcagtagaatggtctt 1233369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 654
Target Start/End: Complemental strand, 1194190 - 1194126
Alignment:
Q  590 aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc 654  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  1194190 aaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc 1194126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 715 - 777
Target Start/End: Complemental strand, 1183244 - 1183182
Alignment:
Q  715 caaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatcc 777  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  1183244 caaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatcc 1183182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 750
Target Start/End: Complemental strand, 1194111 - 1194054
Alignment:
Q  693 cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacat 750  Q
    |||||||| | ||||||||||||||||| ||||||  ||||| |||||||||||||||    
T  1194111 cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacat 1194054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 1233137 - 1233185
Alignment:
Q  99 tttttcatcggattatagaaaatatcttatgaggggaaattgattgatg 147  Q
    ||||| || |||||||||||||||||||||||||||| ||| |||||||    
T  1233137 tttttgataggattatagaaaatatcttatgaggggagattcattgatg 1233185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 1233262 - 1233302
Alignment:
Q  176 agttcaattatgagtgaatatagttataaagctaccatata 216  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  1233262 agttcaattataagtgaatatagttataaagctatcatata 1233302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 561 - 776
Target Start/End: Complemental strand, 20565 - 20346
Alignment:
Q  561 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac 660  Q
    |||||| ||||||||||||||  ||  ||||||||||||| |||| |||| | |  ||||||||||| |||||||| |||||||||||| |||||  |||    
T  20565 cctaaatacaataacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccccagcac 20466  T
Q  661 actaaaaacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctaca----aaaacagaactttgcagacctgcattatctacatcaaaac 756  Q
    ||||||||||||||||||| |||||| |||| | |||||| || ||||||| ||||    |||||||||||  |||||||||||||||| ||||  ||||    
T  20465 actaaaaacacacccaacaacaacacgaagcacacaaaaatagcgcaacaggtacaaaataaaacagaactcggcagacctgcattatccacattgaaac 20366  T
Q  757 ctagatattcaattgtcatc 776  Q
    |||||||||| |||| ||||    
T  20365 ctagatattctattgccatc 20346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 632
Target Start/End: Original strand, 20256439 - 20256510
Alignment:
Q  561 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcatag 632  Q
    |||||||||||||||||||||  || |||||||||||||| |||| |||| |||| ||| ||||||||||||    
T  20256439 cctaaagacaataacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag 20256510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 667
Target Start/End: Complemental strand, 12857476 - 12857370
Alignment:
Q  561 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac 660  Q
    |||||| | ||||||||||||   | |||||||||||||| |||| ||||||||   ||||||| ||||||||||| | |||||||||| |||||  |||    
T  12857476 cctaaatataataacacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccccagcac 12857377  T
Q  661 actaaaa 667  Q
    |||||||    
T  12857376 actaaaa 12857370  T

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