View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_41 (Length: 406)
Name: NF2324_low_41
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_41 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 11459637 - 11460040
Alignment:
| Q |
15 |
caaaggagcaaaataaggagcattaaagacaaattcaaggccttaatttcgcccagc-------------aggagttacatagctgatagaataatgtca |
101 |
Q |
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| T |
11459637 |
caaaggagcaaaataaggagcattaaagacaaattcaaggccttaatttcgcccagccagtcattggaacaggagttacatagctgatggaataatgtca |
11459736 |
T |
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| Q |
102 |
ttttagtattagtataattgccttttatgctgtactttattaccagtttttattatctttgcattgtatt-cggctatatatgccatgcttgctggacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11459737 |
ttttagtattagtataattgccttttatgctgtactttattatcagtttttattatctttgcattgtatttcggctatatatgccatgcttgctggacat |
11459836 |
T |
|
| Q |
201 |
tgtaatatacatatatagaacagttcaagcttacctagaatttgtgtctacattttcgaaagattattagcaagtgacgtcttgataataatccgattag |
300 |
Q |
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| T |
11459837 |
tgtaatgtagagata--gaacagttcaagcttacccagaatttgtgtctacattttcgaaaggttattagcaagtgacgtcttgataataatccgattag |
11459934 |
T |
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| Q |
301 |
ctcaattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaa |
400 |
Q |
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| T |
11459935 |
ctcaattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaa |
11460034 |
T |
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| Q |
401 |
acactt |
406 |
Q |
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|||||| |
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| T |
11460035 |
acactt |
11460040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 11464619 - 11465022
Alignment:
| Q |
15 |
caaaggagcaaaataaggagcattaaagacaaattcaaggccttaatttcgcccagc-------------aggagttacatagctgatagaataatgtca |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
11464619 |
caaaggagcaaaataaggagcattaaagacaaattcaaggccttaatttcgcccagccagtcattggaacaggagttacatagctgatggaataatgtca |
11464718 |
T |
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| Q |
102 |
ttttagtattagtataattgccttttatgctgtactttattaccagtttttattatctttgcattgtatt-cggctatatatgccatgcttgctggacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11464719 |
ttttagtattagtataattgccttttatgctgtactttattatcagtttttattatctttgcattgtatttcggctatatatgccatgcttgctggacat |
11464818 |
T |
|
| Q |
201 |
tgtaatatacatatatagaacagttcaagcttacctagaatttgtgtctacattttcgaaagattattagcaagtgacgtcttgataataatccgattag |
300 |
Q |
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| T |
11464819 |
tgtaatgtagagata--gaacagttcaagcttacccagaatttgtgtctacattttcgaaaggttattagcaagtgacgtcttgataataatccgattag |
11464916 |
T |
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| Q |
301 |
ctcaattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11464917 |
ctcaattggtgttgagtgctaatctctttgttaaactattggtgtagtctaacattgcctatcccttgctgtttcactaaaatacgaaaactatccaaaa |
11465016 |
T |
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| Q |
401 |
acactt |
406 |
Q |
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|||||| |
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| T |
11465017 |
acactt |
11465022 |
T |
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