View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_42 (Length: 391)
Name: NF2324_low_42
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 4389478 - 4389849
Alignment:
| Q |
1 |
atgaattgggagttattaaaacaagggaaagacacgttaagcctcctggttttagctttattggcccaacatatctgaattcccaataaaaggaaaatat |
100 |
Q |
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| T |
4389478 |
atgaattgggagttattaaaacaagggaaagacacgttaagccttctggttttagctttattggcccaacatatctgaattcccaataaagggaaaatat |
4389577 |
T |
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| Q |
101 |
attcttgggttagacttgtctacttgatgcagtccactgtaaaacattttagagtagtattggcaataaatttgcaaacgggaaatagaaaaaaggcgcc |
200 |
Q |
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| T |
4389578 |
attcttgggttagacttgtctacttgatgcagtccactgtaaaacattttagagtagtattggcaataaatttgcaaacgggaaatagaaaaaaggcgcc |
4389677 |
T |
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| Q |
201 |
ggctaaaaataaaagtaaggttcatagggatttacaaaacaaaatagatgcacatgaggacattggtaaaagctttggtgtgttttcgcttcatgatgat |
300 |
Q |
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| T |
4389678 |
ggctaaaaataaaagtaaggttcatagggatttacaaaacaaaatagatgcacatgaggacattggtaaaagctttggtgtgttttcgcttcatgatgat |
4389777 |
T |
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| Q |
301 |
gaggatgtcttgcaaggcacggtgaaattgcgcaggagcagtagaaagaagagggtg---ggagggtagccc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4389778 |
gaggatgtcttgcaaggcacggtgaaattgcgcaggagcagtagaaagaagagggtggtgggagggtagccc |
4389849 |
T |
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