View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_43 (Length: 390)
Name: NF2324_low_43
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 1187902 - 1188256
Alignment:
| Q |
9 |
ccatcaactactccatcaaccacaccatcagctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatg |
108 |
Q |
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| T |
1187902 |
ccatccactactccatcaaccacaccatcagctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatg |
1188001 |
T |
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| Q |
109 |
gtgttagtcttttgattggttctttctttgtttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatg |
208 |
Q |
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| T |
1188002 |
gtgttagtcttttgattggttctttctttgtttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatg |
1188101 |
T |
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| Q |
209 |
tactattggtttgttgaatttgcttgaatttcatttcatcttgatgtgtatgagcctttaattaaaaaagaaaacatatcttcttttataggcattttta |
308 |
Q |
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| T |
1188102 |
tactattggtttgttgaatttgcttgaatttcatttcatcttgatgtgtatgagcctttaattaaaaaagaaaacatttcttcttttataggc------- |
1188194 |
T |
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| Q |
309 |
cgggtataataattccttccttttgttgtttggttgtcaataattgaaatggaaacaactatatatt |
375 |
Q |
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| T |
1188195 |
-----ataataattccttccttttgttgtttggttgtcaataattgaaatggaaacaactatatatt |
1188256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 1180738 - 1180963
Alignment:
| Q |
19 |
ctccatcaaccacaccatcagctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatggtgttagtct |
118 |
Q |
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| T |
1180738 |
ctccatcaactactccatcagctccttcagagacaaattcaactactccatcaccaccaaaggataatggagcttttagtgtttccaatggtgttagtct |
1180837 |
T |
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| Q |
119 |
tttgattggttctttctttgtttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatgtactattggt |
218 |
Q |
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| T |
1180838 |
tttgatgggttctttctttgtttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcatcttaatttatgtactattggt |
1180937 |
T |
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| Q |
219 |
ttgttgaatttgcttgaatttcattt |
244 |
Q |
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| T |
1180938 |
ttgttgaatttgcttaaattttattt |
1180963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 1180989 - 1181025
Alignment:
| Q |
243 |
ttcatcttgatgtgtatgagcctttaattaaaaaaga |
279 |
Q |
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| T |
1180989 |
ttcatcttgatgtgtatgagcttttaattaaaaaaga |
1181025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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