View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_49 (Length: 372)
Name: NF2324_low_49
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 54727836 - 54727497
Alignment:
| Q |
19 |
atgaagttataaagaaaggagatgacatttgaacgctagatcattcttttgatgattgtataaaaaactagattgataaatgatagataaataatataac |
118 |
Q |
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| T |
54727836 |
atgaagttataaagaaaggagatgacatttgaacgctagatcattcttttgatgattgtataaaaaactagattgataaat--------------ataac |
54727751 |
T |
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| Q |
119 |
agataagaactgtgttcaataagctctaatcctcttagaatgatatccatgcagcttgttcacaagaggaagttaataaggttatggattcagcaaaagc |
218 |
Q |
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| T |
54727750 |
agataagaactgtgttcaataagctctaatcctcttagaatgatatccatgcagcttgttcacaagaggaagttaataaggttatggattcagcaaaagc |
54727651 |
T |
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| Q |
219 |
agcacaaaagtcatgggcaaagactccactttggaagagggctgaacttcttcacaaggcagctgcaatcctcaaagaacacaaagctgcaattgcagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727650 |
agcacaaaagtcatgggcaaagactccactttggaagagggctgaacttcttcacaaggcagctgcaatcctcaaagaacacaaagctgcaattgcagaa |
54727551 |
T |
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| Q |
319 |
tgcttagtcaaagaaatagcaaagccagcgaaagatgcagttacagaggtgcat |
372 |
Q |
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| T |
54727550 |
tgcttagtcaaagaaatagcaaagccagcgaaagatgcagttacagaggtgcat |
54727497 |
T |
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