View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_50 (Length: 371)
Name: NF2324_low_50
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 43736799 - 43737028
Alignment:
| Q |
11 |
cacagacacaaaaaccaatcaaaagaaatagaattttca-cttattttgaaagaactgatgaaatagctgtgatcacttagacatgaattgagttgaagg |
109 |
Q |
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| T |
43736799 |
cacaaacacaaaaaccaatcaaaagaaatagaattttcaacttattttgaaagaactgatgaaatagctgtgatcacttagacatgaattgagttgaagg |
43736898 |
T |
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| Q |
110 |
aggattgttcaatgttggatcactttgctgttttgaatgctgcagtgcaagaattccattccaccctgcactcacattttttgttatagttgtcaatttt |
209 |
Q |
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| T |
43736899 |
aggattgttcaatgttggatcactttgatgttttgaatgctgtagtgcaagaattccattccaccctgcactcacattttttgttatagttgtcaattta |
43736998 |
T |
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| Q |
210 |
cagtcactttataaatgaacatctttattt |
239 |
Q |
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| T |
43736999 |
cagtcactttataaatgaacatctttattt |
43737028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 43737081 - 43737146
Alignment:
| Q |
289 |
gaggtgaattaattaccaagagcagggtcaagtcctctaattttgagttctctgaactcttgacat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43737081 |
gaggtgaattaattaccaagagcagggtcaagtcctctaattttgagttctctgaactcttgacat |
43737146 |
T |
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