View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_52 (Length: 364)
Name: NF2324_low_52
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_52 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 27611746 - 27612103
Alignment:
| Q |
8 |
taaccaaactccggtaagcaagtacaggagtaagctgatcagagaatatgcactgatagataggaatcaagtatccattctttgatgcctctataaactt |
107 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||| |||||| |||||||||||||||||||| |
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| T |
27611746 |
taaccaaactccggtaagcaagaacaggagtaagctgatcagagaatatacactgatacagaggaatcaagtttccattttttgatgcctctataaactt |
27611845 |
T |
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| Q |
108 |
ctttctttcatcaacctcttcagctgcaaaaataatagacccttgttaaaaaattcccnnnnnnnnnnnnn-caatgaaaactctgaaattattgaaaag |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
27611846 |
ctttctttcatcaacctcttgagctgcaaaaataatagacctttgttaaaaaattccctctttttcatttttcaatgtaaactctaaaattattgaaaag |
27611945 |
T |
|
| Q |
207 |
tgaaaatgcatgttaggaaacataatgagtttaacaaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtca |
306 |
Q |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27611946 |
tgaaaatgcatgttgggaaccacaatgagtttaataaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtca |
27612045 |
T |
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| Q |
307 |
atccaaacatgctcaaaaagactaaaacaaacattaacttaccaatggctgcagttgt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27612046 |
atccaaacatgctcaaaaagactaaaacaaacattaacttaccaatggctgcagttgt |
27612103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 34500269 - 34500626
Alignment:
| Q |
8 |
taaccaaactccggtaagcaagtacaggagtaagctgatcagagaatatgcactgatagataggaatcaagtatccattctttgatgcctctataaactt |
107 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||| |||||| |||||||||||||||||||| |
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| T |
34500269 |
taaccaaactccggtaagcaagaacaggagtaagctgatcagagaatatacactgatacagaggaatcaagtttccattttttgatgcctctataaactt |
34500368 |
T |
|
| Q |
108 |
ctttctttcatcaacctcttcagctgcaaaaataatagacccttgttaaaaaattcccnnnnnnnnnnnnn-caatgaaaactctgaaattattgaaaag |
206 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||| |
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| T |
34500369 |
ctttctttcatgaacctcttgagctgcaaaaataatagacccttgttaaaaaattccctctttttcatttttcgatgtaaactctaaaattattgaaaag |
34500468 |
T |
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| Q |
207 |
tgaaaatgcatgttaggaaacataatgagtttaacaaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtca |
306 |
Q |
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|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34500469 |
tgaaaatgcatgttgggaaccacaatgagtttaacaaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtca |
34500568 |
T |
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| Q |
307 |
atccaaacatgctcaaaaagactaaaacaaacattaacttaccaatggctgcagttgt |
364 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34500569 |
atacaaacatgctcaaaaagactaaaacaaacattaacttaccaatggctgcagttgt |
34500626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 31502466 - 31502145
Alignment:
| Q |
4 |
tcattaaccaaactccggtaagcaagtacaggagtaagctgatcagagaatatgcactgatagataggaatcaagtatccattctttgatgcctctataa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31502466 |
tcattaaccaaactccggtaagcaagtacaggagtaagctgatcagagaatatgcactgatagataggaatcaagtttccattctttgatgcctctataa |
31502367 |
T |
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| Q |
104 |
acttctttctttcatcaacctcttcagctgcaaaaataatagacccttgttaaaaaattccc-nnnnnnnnnnnnncaatgaaaactctgaaattattga |
202 |
Q |
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| T |
31502366 |
acttctttctttcatcaacctcttcagctgcaaaaataatagacccttgttaaaaaattccctctttttcatttttcaatgaaaactctgaaattattga |
31502267 |
T |
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| Q |
203 |
aaagtgaaaatgcatgttaggaaacataatgagtttaacaaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcacc |
302 |
Q |
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| T |
31502266 |
aaagtgaaaatgcatgttgggaaccacaatgggtttaacaaaatcacgttggcaccgtgatttcatgccaaaaatacaccgtgattctgccaaactcact |
31502167 |
T |
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| Q |
303 |
gtcaatccaaacatgctcaaaa |
324 |
Q |
| |
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||||||||||||| || ||||| |
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| T |
31502166 |
gtcaatccaaacaagcacaaaa |
31502145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 31501875 - 31501833
Alignment:
| Q |
322 |
aaaagactaaaacaaacattaacttaccaatggctgcagttgt |
364 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
31501875 |
aaaaaactaaaacaaacatgaacttaccaatggctgcagttgt |
31501833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 39858834 - 39858798
Alignment:
| Q |
282 |
cgtgattctgccaaattcaccgtcaatccaaacatgc |
318 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |
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| T |
39858834 |
cgtgattctgccaatttcacagtcaatccaaacatgc |
39858798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 8937692 - 8937726
Alignment:
| Q |
284 |
tgattctgccaaattcaccgtcaatccaaacatgc |
318 |
Q |
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| T |
8937692 |
tgattctgccaaattcaccgtcaatccaaacatgc |
8937726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 31848511 - 31848483
Alignment:
| Q |
287 |
ttctgccaaattcaccgtcaatccaaaca |
315 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31848511 |
ttctgccaaattcaccgtcaatccaaaca |
31848483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 44770455 - 44770419
Alignment:
| Q |
277 |
cacatcgtgattctgccaaattcaccgtcaatccaaa |
313 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
44770455 |
cacatcttgattctgccaaattcaccgtcaatccaaa |
44770419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 6700485 - 6700452
Alignment:
| Q |
283 |
gtgattctgccaaattcaccgtcaatccaaacat |
316 |
Q |
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| T |
6700485 |
gtgattctgccaaattcaccgtcaaaccaaacat |
6700452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 4506753 - 4506789
Alignment:
| Q |
282 |
cgtgattctgccaaattcaccgtcaatccaaacatgc |
318 |
Q |
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||||||| || |||||||||||||||||||||||||| |
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| T |
4506753 |
cgtgattatgtcaaattcaccgtcaatccaaacatgc |
4506789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 7985160 - 7985194
Alignment:
| Q |
282 |
cgtgattctgccaaattcaccgtcaatccaaacat |
316 |
Q |
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| T |
7985160 |
cgtgattctgccaaactcaccgtcaatccaaacat |
7985194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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