View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_53 (Length: 361)
Name: NF2324_low_53
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 42031310 - 42030981
Alignment:
| Q |
21 |
aaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggtaacaattctgaattttagaagcaatagtggttctacaaatgannnnnnng |
120 |
Q |
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| T |
42031310 |
aaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggtaacaattctgaattttagaagcaatagtggttctacaaatgatttttttg |
42031211 |
T |
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| Q |
121 |
ttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaagaagagctatattgagttattattactgtcatggttggaaattgtatac |
220 |
Q |
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| T |
42031210 |
ttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaagaagagctatattgagttattattactgtcatggttggaaattgtatac |
42031111 |
T |
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| Q |
221 |
atgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcattctgaggtgtgtggattttgcaagacttggtggctgttattaaccaaggc |
320 |
Q |
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| T |
42031110 |
atgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcattctgagatgtgtggattttgcaagacttggtggctgttattaaccaaggc |
42031011 |
T |
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| Q |
321 |
tgactattacacagtatcctgggttttctt |
350 |
Q |
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| T |
42031010 |
tgactattacacagtatcctgggttttctt |
42030981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 5997237 - 5996904
Alignment:
| Q |
16 |
catcaaaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggtaacaattctgaattttagaagcaatagtggttctacaaatgannn |
115 |
Q |
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| T |
5997237 |
catcgaaaacgtgtttcctaccttggactctgcaaaaggaattgtgaattttggtaacaattctgaattttagaagcaatagtggttctacaaatgattt |
5997138 |
T |
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| Q |
116 |
nnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaagaagagctatattgagttattattactgtcatggttggaaattg |
215 |
Q |
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| T |
5997137 |
ttt-gttgaattttgattaatttcgggtgctacatatcaacaaagaaaatgggaaagaagagctatattgagttattattactgtcatggttggaaattg |
5997039 |
T |
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| Q |
216 |
tatacatgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcattctgaggtgtgtggattttgcaagacttggtggctgttattaacc |
315 |
Q |
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| T |
5997038 |
tatacatgtgttccacaagaatgtttgtgttgtgaggaagtagcattagtgtcattctgaggtgtgtggattttgcaagacttggtggctgttattaacc |
5996939 |
T |
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| Q |
316 |
aaggctgactattacacagtatcctgggttttctt |
350 |
Q |
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| T |
5996938 |
aaggctgcctattacacagtagcctgggttttctt |
5996904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 16101938 - 16102103
Alignment:
| Q |
73 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
172 |
Q |
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||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| | || |||||||||||||||||||||||| | |||| |
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| T |
16101938 |
caattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgatttagtttaggtgctacatatcaacaaagaaaaatggaaag |
16102037 |
T |
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| Q |
173 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
239 |
Q |
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| T |
16102038 |
aagatctatattg-gttattattactgtcatggttgggaattatatacatgtgttccgcaagaatgt |
16102103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 17618791 - 17618627
Alignment:
| Q |
73 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
172 |
Q |
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|||||||||||||| ||| ||||||||||||||||||| |||||||||| ||| | | | ||||||||||||||||||||||||| | |||| |
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| T |
17618791 |
caattctgaattttgtaagtaatagtggttctacaaatg-gttttttgttgaatttttattcagtacaggtgctacatatcaacaaagaaaattggaaag |
17618693 |
T |
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| Q |
173 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
239 |
Q |
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| T |
17618692 |
aatagttatattg-gttattattactgtcatggttgggaattatatacatgtgttccgcaagaatgt |
17618627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 12210650 - 12210488
Alignment:
| Q |
73 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
172 |
Q |
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||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||| | |||| |
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| T |
12210650 |
caattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgattcagttcaggtgctacatatcaacaaagaaaattggaaag |
12210551 |
T |
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| Q |
173 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
239 |
Q |
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||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||| |
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| T |
12210550 |
aagagctatattg----gttattactatcatggttgggaattatatacatgtgttccgcaagaatgt |
12210488 |
T |
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