View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_56 (Length: 357)
Name: NF2324_low_56
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_56 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 10615625 - 10615406
Alignment:
| Q |
122 |
tataactctataaattcatattgttacctcatatattctaaatttttaacgaggagaactaactgttaattactactaaaatgagttaaagaaaatggaa |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615625 |
tataactctataaattcatat-gttacctcatatattctaaatttttaacgaggagaactaactgttaattactactaaaatgagttaaagaaaatggaa |
10615527 |
T |
|
| Q |
222 |
aacatgtttatagggtaagagatttacattagttttcatagtattaatttgtttttatgtgttgtaattacacaatcatatctgagtcacgtatatgctt |
321 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615526 |
aacacgtttatagggtaagagatttaaattagttttcatagtattaatttttttttatgtgttgtaattacacaatcatatctgagtcacgtatatgctt |
10615427 |
T |
|
| Q |
322 |
tatagtatatgcactatactg |
342 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10615426 |
tatagtatatgcactatactg |
10615406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 10615687 - 10615643
Alignment:
| Q |
67 |
tagcctgcctcttattattcattctattatctcttcttgtcatga |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
10615687 |
tagcctgcctctttttattcattctattatctcttcttgtaatga |
10615643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University